DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Nectria haematococca mpVI
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Nectria; Nectria haematococca complex
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Necha2|67124|estExt_Genewise1Plus.C_sca_2_chr3_3_00374 External link nx SF
  nx PF
jgi|Necha2|78482|fgenesh1_pg.sca_31_chr3_5_0000173 External link nx SF
  nx PF
jgi|Necha2|91927|fgenesh1_pm.sca_2_chr3_3_0000327 External link nx SF
  nx PF
jgi|Necha2|62176|estExt_Genewise1.C_sca_20_chr6_4_01018 External link nx SF
  nx PF
jgi|Necha2|32931|e_gw1.18.217.1 External link nx SF
  nx PF
jgi|Necha2|90976|fgenesh1_pm.sca_18_chr2_1_0000380 External link nx SF
  nx PF
jgi|Necha2|88991|fgenesh1_pg.sca_83_unmapped000003 External link nx SF
  nx PF
jgi|Necha2|56277|e_gw1.116.29.1 External link nx SF
  nx PF
jgi|Necha2|59326|estExt_Genewise1.C_sca_2_chr3_3_01317 External link nx SF
  nx PF
jgi|Necha2|104418|estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 External link nx SF
  nx PF
jgi|Necha2|20376|gw1.6.843.1 External link nx SF
  nx PF No hits
jgi|Necha2|83430|fgenesh1_pg.sca_17_chr8_1_0000203 External link nx SF
  nx PF
jgi|Necha2|81846|fgenesh1_pg.sca_20_chr6_4_0000472 External link nx SF
  nx PF
jgi|Necha2|85112|fgenesh1_pg.sca_6_chr9_2_0000575 External link nx SF
  nx PF
jgi|Necha2|45494|e_gw1.9.472.1 External link nx SF
  nx PF
jgi|Necha2|81988|fgenesh1_pg.sca_20_chr6_4_0000614 External link nx SF
  nx PF
jgi|Necha2|77451|fgenesh1_pg.sca_2_chr3_3_0000173 External link nx SF
  nx PF
jgi|Necha2|67078|estExt_Genewise1Plus.C_sca_2_chr3_3_00269 External link nx SF
  nx PF
jgi|Necha2|54141|e_gw1.15.472.1 External link nx SF
  nx PF
jgi|Necha2|67993|estExt_Genewise1Plus.C_sca_3_chr4_2_00108 External link nx SF
  nx PF
jgi|Necha2|85205|fgenesh1_pg.sca_6_chr9_2_0000668 External link nx SF
  nx PF
jgi|Necha2|96746|fgenesh1_pm.sca_82_chr10_2_0000188 External link nx SF
  nx PF
jgi|Necha2|82622|fgenesh1_pg.sca_9_chr7_10_0000146 External link nx SF
  nx PF
jgi|Necha2|98980|estExt_fgenesh1_pg.C_sca_1_chr1_3_01001 External link nx SF
  nx PF
jgi|Necha2|81580|fgenesh1_pg.sca_20_chr6_4_0000206 External link nx SF
  nx PF
jgi|Necha2|88894|fgenesh1_pg.sca_21_unmapped000001 External link nx SF
  nx PF
jgi|Necha2|79882|fgenesh1_pg.sca_12_chr5_2_0000062 External link nx SF
  nx PF
jgi|Necha2|70404|estExt_Genewise1Plus.C_sca_20_chr6_4_00971 External link nx SF
  nx PF
jgi|Necha2|66207|estExt_Genewise1Plus.C_sca_18_chr2_1_00709 External link nx SF
  nx PF
jgi|Necha2|74018|fgenesh1_pg.sca_8_chr1_1_0000049 External link nx SF
  nx PF
jgi|Necha2|44807|e_gw1.58.53.1 External link nx SF
  nx PF
jgi|Necha2|21902|gw1.43.157.1 External link nx SF
  nx PF
jgi|Necha2|100921|estExt_fgenesh1_pg.C_sca_20_chr6_4_00369 External link nx SF
  nx PF
jgi|Necha2|100289|estExt_fgenesh1_pg.C_sca_19_chr4_3_00087 External link nx SF
  nx PF
jgi|Necha2|45071|e_gw1.9.611.1 External link nx SF
  nx PF
jgi|Necha2|47027|e_gw1.10.564.1 External link nx SF
  nx PF
jgi|Necha2|13130|gw1.40.62.1 External link nx SF
  nx PF
jgi|Necha2|11912|gw1.15.255.1 External link nx SF
  nx PF
jgi|Necha2|103670|estExt_fgenesh1_pm.C_sca_2_chr3_3_00095 External link nx SF
  nx PF
jgi|Necha2|55236|e_gw1.24.57.1 External link nx SF
  nx PF
jgi|Necha2|35055|e_gw1.44.185.1 External link nx SF
  nx PF
jgi|Necha2|102279|estExt_fgenesh1_pg.C_sca_86_unmapped0012 External link nx SF
  nx PF
jgi|Necha2|59099|estExt_Genewise1.C_sca_2_chr3_3_00763 External link nx SF
  nx PF
jgi|Necha2|86666|fgenesh1_pg.sca_32_chr11_3_0000061 External link nx SF
  nx PF
jgi|Necha2|67867|estExt_Genewise1Plus.C_sca_31_chr3_5_00235 External link nx SF
  nx PF
jgi|Necha2|87744|fgenesh1_pg.sca_15_chr12_5_0000181 External link nx SF
  nx PF
jgi|Necha2|76038|fgenesh1_pg.sca_18_chr2_1_0000229 External link nx SF
  nx PF
jgi|Necha2|92898|fgenesh1_pm.sca_3_chr4_2_0000513 External link nx SF
  nx PF No hits
jgi|Necha2|47910|e_gw1.11.552.1 External link nx SF
  nx PF
jgi|Necha2|99482|estExt_fgenesh1_pg.C_sca_2_chr3_3_00011 External link nx SF
  nx PF