DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Oryctolagus cuniculus 49_1f (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSOCUP00000015197 External link o3 SF
  o3 PF
ENSOCUP00000007982 External link o3 SF
  o3 PF
ENSOCUP00000002862 External link o3 SF
  o3 PF
ENSOCUP00000001154 External link o3 SF
  o3 PF
ENSOCUP00000002859 External link o3 SF
  o3 PF
ENSOCUP00000005253 External link o3 SF
  o3 PF
ENSOCUP00000003951 External link o3 SF
  o3 PF
ENSOCUP00000000900 External link o3 SF
  o3 PF
ENSOCUP00000008452 External link o3 SF
  o3 PF
ENSOCUP00000009373 External link o3 SF
  o3 PF
ENSOCUP00000014558 External link o3 SF
  o3 PF
ENSOCUP00000011203 External link o3 SF
  o3 PF
ENSOCUP00000006104 External link o3 SF
  o3 PF
ENSOCUP00000005761 External link o3 SF
  o3 PF
ENSOCUP00000009840 External link o3 SF
  o3 PF
ENSOCUP00000013650 External link o3 SF
  o3 PF
ENSOCUP00000005967 External link o3 SF
  o3 PF
ENSOCUP00000007739 External link o3 SF
  o3 PF
ENSOCUP00000000539 External link o3 SF
  o3 PF
ENSOCUP00000000262 External link o3 SF
  o3 PF
ENSOCUP00000004489 External link o3 SF
  o3 PF
ENSOCUP00000015135 External link o3 SF
  o3 PF
ENSOCUP00000006701 External link o3 SF
  o3 PF
ENSOCUP00000015302 External link o3 SF
  o3 PF
ENSOCUP00000007060 External link o3 SF
  o3 PF
ENSOCUP00000001046 External link o3 SF
  o3 PF
ENSOCUP00000011358 External link o3 SF
  o3 PF
ENSOCUP00000005307 External link o3 SF
  o3 PF
ENSOCUP00000006201 External link o3 SF
  o3 PF
ENSOCUP00000000618 External link o3 SF
  o3 PF
ENSOCUP00000004780 External link o3 SF
  o3 PF
ENSOCUP00000004024 External link o3 SF
  o3 PF
ENSOCUP00000008068 External link o3 SF
  o3 PF
ENSOCUP00000007867 External link o3 SF
  o3 PF
ENSOCUP00000009970 External link o3 SF
  o3 PF
ENSOCUP00000005917 External link o3 SF
  o3 PF
ENSOCUP00000006682 External link o3 SF
  o3 PF
ENSOCUP00000000851 External link o3 SF
  o3 PF
ENSOCUP00000004242 External link o3 SF
  o3 PF
ENSOCUP00000006569 External link o3 SF
  o3 PF
ENSOCUP00000003909 External link o3 SF
  o3 PF
ENSOCUP00000002729 External link o3 SF
  o3 PF
ENSOCUP00000012634 External link o3 SF
  o3 PF
ENSOCUP00000005400 External link o3 SF
  o3 PF
ENSOCUP00000005071 External link o3 SF
  o3 PF
ENSOCUP00000010360 External link o3 SF
  o3 PF
ENSOCUP00000011646 External link o3 SF
  o3 PF
ENSOCUP00000011105 External link o3 SF
  o3 PF
ENSOCUP00000003234 External link o3 SF
  o3 PF
ENSOCUP00000004779 External link o3 SF
  o3 PF