DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ostreococcus sp. RCC809
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Ostreococcus
source (downloaded: 2008-08-06)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|OstRCC809_1|94670|eugene1.0000090273 External link o8 SF
  o8 PF No hits
jgi|OstRCC809_1|45693|estExt_Genewise1Plus.C_40774 External link o8 SF
  o8 PF
jgi|OstRCC809_1|88424|eugene1.0000140158 External link o8 SF
  o8 PF
jgi|OstRCC809_1|27714|e_gw1.9.270.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|51452|estExt_fgenesh1_kg.C_50008 External link o8 SF
  o8 PF
jgi|OstRCC809_1|43521|fgenesh1_pm.C_scaffold_15000074 External link o8 SF
  o8 PF
jgi|OstRCC809_1|55400|estExt_Genewise1.C_60804 External link o8 SF
  o8 PF
jgi|OstRCC809_1|41252|fgenesh1_pm.C_scaffold_4000300 External link o8 SF
  o8 PF
jgi|OstRCC809_1|16724|gw1.2.1411.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|93996|eugene1.0000080048 External link o8 SF
  o8 PF
jgi|OstRCC809_1|16248|gw1.16.558.1 External link o8 SF
  o8 PF No hits
jgi|OstRCC809_1|48453|estExt_Genewise1Plus.C_130473 External link o8 SF
  o8 PF
jgi|OstRCC809_1|7277|gw1.14.290.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|32343|e_gw1.15.596.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|16438|gw1.9.853.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|16088|gw1.4.1115.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|87687|eugene1.0000120066 External link o8 SF
  o8 PF
jgi|OstRCC809_1|35592|fgenesh1_pg.C_scaffold_2000320 External link o8 SF
  o8 PF
jgi|OstRCC809_1|53174|estExt_Genewise1.C_10494 External link o8 SF
  o8 PF
jgi|OstRCC809_1|34377|e_gw1.33.3.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|14654|gw1.2.1210.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|91870|eugene1.0000040016 External link o8 SF
  o8 PF
jgi|OstRCC809_1|17067|gw1.1.1656.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|49962|estExt_fgenesh1_pg.C_30340 External link o8 SF
  o8 PF
jgi|OstRCC809_1|31561|e_gw1.14.634.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|33965|e_gw1.19.138.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|51295|estExt_fgenesh1_pg.C_190009 External link o8 SF
  o8 PF
jgi|OstRCC809_1|29274|e_gw1.11.294.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|16972|gw1.12.740.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|2208|gw1.10.108.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|49236|estExt_Genewise1Plus.C_170324 External link o8 SF
  o8 PF
jgi|OstRCC809_1|34010|e_gw1.19.211.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|88161|eugene1.0000130215 External link o8 SF
  o8 PF
jgi|OstRCC809_1|6235|gw1.3.484.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|20629|e_gw1.3.768.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|52655|estExt_fgenesh1_pm.C_120063 External link o8 SF
  o8 PF
jgi|OstRCC809_1|8734|gw1.5.543.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|41293|fgenesh1_pm.C_scaffold_5000029 External link o8 SF
  o8 PF
jgi|OstRCC809_1|17170|gw1.1.1669.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|7292|gw1.13.267.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|40078|fgenesh1_pm.C_scaffold_1000342 External link o8 SF
  o8 PF No hits
jgi|OstRCC809_1|45785|estExt_Genewise1Plus.C_41045 External link o8 SF
  o8 PF
jgi|OstRCC809_1|41488|fgenesh1_pm.C_scaffold_5000224 External link o8 SF
  o8 PF
jgi|OstRCC809_1|27696|e_gw1.9.406.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|34772|fgenesh1_kg.C_scaffold_17000001 External link o8 SF
  o8 PF No hits
jgi|OstRCC809_1|8628|gw1.4.712.1 External link o8 SF
  o8 PF No hits
jgi|OstRCC809_1|42837|fgenesh1_pm.C_scaffold_11000093 External link o8 SF
  o8 PF
jgi|OstRCC809_1|20600|e_gw1.3.689.1 External link o8 SF
  o8 PF No hits
jgi|OstRCC809_1|12598|gw1.13.513.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|9678|gw1.7.575.1 External link o8 SF
  o8 PF