DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ostreococcus sp. RCC809
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Ostreococcus
source (downloaded: 2008-08-06)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|OstRCC809_1|32761|e_gw1.16.115.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|19702|e_gw1.2.1267.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|37733|fgenesh1_pg.C_scaffold_9000127 External link o8 SF
  o8 PF
jgi|OstRCC809_1|16187|gw1.1.1573.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|18737|e_gw1.1.1664.1 External link o8 SF
  o8 PF
jgi|OstRCC809_1|14992|gw1.10.731.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|25941|e_gw1.7.708.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|44930|estExt_Genewise1Plus.C_21108 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|59507|est_orfs.12_1093_CBPU_CBPX_CBPY_826_1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|88294|eugene1.0000140028 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|41173|fgenesh1_pm.C_scaffold_4000221 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|89445|eugene1.0000180035 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|8722|gw1.1.849.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|94034|eugene1.0000080086 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|8381|gw1.2.648.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|50333|estExt_fgenesh1_pg.C_60231 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|51132|estExt_fgenesh1_pg.C_150186 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|37020|fgenesh1_pg.C_scaffold_6000291 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|94494|eugene1.0000090097 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|25286|e_gw1.7.934.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|17142|gw1.10.835.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|87144|eugene1.0000100211 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|22585|e_gw1.4.1196.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|39508|fgenesh1_pg.C_scaffold_18000052 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|22176|e_gw1.4.139.1 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|93004|eugene1.0000060076 External link o8 SF No hits
  o8 PF
jgi|OstRCC809_1|30041|e_gw1.12.271.1 External link o8 SF No hits
  o8 PF