DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Pongo pygmaeus 49_1 (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSPPYP00000018150 External link of SF
  of PF
ENSPPYP00000018702 External link of SF
  of PF
ENSPPYP00000021476 External link of SF
  of PF
ENSPPYP00000001550 External link of SF
  of PF
ENSPPYP00000021567 External link of SF
  of PF
ENSPPYP00000011223 External link of SF
  of PF
ENSPPYP00000021570 External link of SF
  of PF
ENSPPYP00000021566 External link of SF
  of PF
ENSPPYP00000021440 External link of SF
  of PF
ENSPPYP00000016789 External link of SF
  of PF
ENSPPYP00000022077 External link of SF
  of PF
ENSPPYP00000014816 External link of SF
  of PF
ENSPPYP00000014819 External link of SF
  of PF
ENSPPYP00000014815 External link of SF
  of PF
ENSPPYP00000014814 External link of SF
  of PF
ENSPPYP00000014817 External link of SF
  of PF
ENSPPYP00000012819 External link of SF
  of PF
ENSPPYP00000001888 External link of SF
  of PF
ENSPPYP00000003346 External link of SF
  of PF
ENSPPYP00000012559 External link of SF
  of PF No hits
ENSPPYP00000010124 External link of SF
  of PF
ENSPPYP00000019039 External link of SF
  of PF
ENSPPYP00000010123 External link of SF
  of PF
ENSPPYP00000012242 External link of SF
  of PF
ENSPPYP00000007975 External link of SF
  of PF
ENSPPYP00000007974 External link of SF
  of PF
ENSPPYP00000013236 External link of SF
  of PF
ENSPPYP00000009623 External link of SF
  of PF
ENSPPYP00000003552 External link of SF
  of PF
ENSPPYP00000007471 External link of SF
  of PF
ENSPPYP00000010535 External link of SF
  of PF
ENSPPYP00000010266 External link of SF
  of PF
ENSPPYP00000022586 External link of SF
  of PF
ENSPPYP00000001087 External link of SF
  of PF
ENSPPYP00000021954 External link of SF
  of PF
ENSPPYP00000000517 External link of SF
  of PF
ENSPPYP00000021980 External link of SF
  of PF
ENSPPYP00000009230 External link of SF
  of PF
ENSPPYP00000000434 External link of SF
  of PF
ENSPPYP00000001434 External link of SF
  of PF
ENSPPYP00000005694 External link of SF
  of PF
ENSPPYP00000022165 External link of SF
  of PF
ENSPPYP00000022164 External link of SF
  of PF
ENSPPYP00000012523 External link of SF
  of PF
ENSPPYP00000022746 External link of SF
  of PF
ENSPPYP00000020563 External link of SF
  of PF
ENSPPYP00000002408 External link of SF
  of PF
ENSPPYP00000010167 External link of SF
  of PF
ENSPPYP00000015026 External link of SF
  of PF
ENSPPYP00000022862 External link of SF
  of PF