DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Oryzias latipes 49_1e (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSORLP00000024504 External link ol SF
  ol PF
ENSORLP00000025780 External link ol SF
  ol PF
ENSORLP00000025381 External link ol SF
  ol PF
ENSORLP00000005200 External link ol SF
  ol PF
ENSORLP00000025779 External link ol SF
  ol PF
ENSORLP00000025778 External link ol SF
  ol PF
ENSORLP00000025382 External link ol SF
  ol PF
ENSORLP00000013273 External link ol SF
  ol PF
ENSORLP00000016227 External link ol SF
  ol PF
ENSORLP00000012576 External link ol SF
  ol PF
ENSORLP00000008922 External link ol SF
  ol PF
ENSORLP00000021967 External link ol SF
  ol PF
ENSORLP00000025238 External link ol SF
  ol PF
ENSORLP00000009366 External link ol SF
  ol PF
ENSORLP00000024165 External link ol SF
  ol PF
ENSORLP00000016678 External link ol SF
  ol PF
ENSORLP00000010406 External link ol SF
  ol PF
ENSORLP00000025710 External link ol SF
  ol PF
ENSORLP00000011418 External link ol SF
  ol PF
ENSORLP00000004379 External link ol SF
  ol PF
ENSORLP00000023681 External link ol SF
  ol PF
ENSORLP00000017308 External link ol SF
  ol PF
ENSORLP00000024628 External link ol SF
  ol PF
ENSORLP00000003103 External link ol SF
  ol PF
ENSORLP00000010434 External link ol SF
  ol PF
ENSORLP00000017525 External link ol SF
  ol PF
ENSORLP00000010433 External link ol SF
  ol PF
ENSORLP00000018910 External link ol SF
  ol PF
ENSORLP00000019077 External link ol SF
  ol PF
ENSORLP00000009261 External link ol SF
  ol PF
ENSORLP00000011113 External link ol SF
  ol PF
ENSORLP00000008446 External link ol SF
  ol PF
ENSORLP00000021702 External link ol SF
  ol PF
ENSORLP00000002593 External link ol SF
  ol PF
ENSORLP00000006265 External link ol SF
  ol PF
ENSORLP00000020908 External link ol SF
  ol PF
ENSORLP00000000611 External link ol SF
  ol PF
ENSORLP00000021711 External link ol SF
  ol PF
ENSORLP00000010999 External link ol SF
  ol PF
ENSORLP00000004995 External link ol SF
  ol PF
ENSORLP00000000613 External link ol SF
  ol PF
ENSORLP00000010997 External link ol SF
  ol PF
ENSORLP00000016672 External link ol SF
  ol PF
ENSORLP00000004997 External link ol SF
  ol PF
ENSORLP00000020614 External link ol SF
  ol PF
ENSORLP00000008408 External link ol SF
  ol PF
ENSORLP00000008410 External link ol SF
  ol PF
ENSORLP00000002550 External link ol SF
  ol PF
ENSORLP00000008271 External link ol SF
  ol PF
ENSORLP00000008409 External link ol SF
  ol PF