DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Monodelphis domestica 49_5d (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSMODP00000012994 External link oo SF
  oo PF
ENSMODP00000023451 External link oo SF
  oo PF
ENSMODP00000000505 External link oo SF
  oo PF
ENSMODP00000004192 External link oo SF
  oo PF
ENSMODP00000004169 External link oo SF
  oo PF
ENSMODP00000004693 External link oo SF
  oo PF
ENSMODP00000004160 External link oo SF
  oo PF
ENSMODP00000012599 External link oo SF
  oo PF
ENSMODP00000022480 External link oo SF
  oo PF
ENSMODP00000016775 External link oo SF
  oo PF
ENSMODP00000015165 External link oo SF
  oo PF
ENSMODP00000004671 External link oo SF
  oo PF
ENSMODP00000014282 External link oo SF
  oo PF
ENSMODP00000010852 External link oo SF
  oo PF
ENSMODP00000013699 External link oo SF
  oo PF
ENSMODP00000021171 External link oo SF
  oo PF
ENSMODP00000026808 External link oo SF
  oo PF
ENSMODP00000015856 External link oo SF
  oo PF
ENSMODP00000004493 External link oo SF
  oo PF
ENSMODP00000030865 External link oo SF
  oo PF
ENSMODP00000016362 External link oo SF
  oo PF
ENSMODP00000020486 External link oo SF
  oo PF
ENSMODP00000004239 External link oo SF
  oo PF
ENSMODP00000011829 External link oo SF
  oo PF
ENSMODP00000000916 External link oo SF
  oo PF
ENSMODP00000004915 External link oo SF
  oo PF
ENSMODP00000028954 External link oo SF
  oo PF
ENSMODP00000019536 External link oo SF
  oo PF
ENSMODP00000004064 External link oo SF
  oo PF
ENSMODP00000029363 External link oo SF
  oo PF
ENSMODP00000024700 External link oo SF
  oo PF
ENSMODP00000007905 External link oo SF
  oo PF
ENSMODP00000015014 External link oo SF
  oo PF
ENSMODP00000024558 External link oo SF
  oo PF
ENSMODP00000015950 External link oo SF
  oo PF
ENSMODP00000001527 External link oo SF
  oo PF
ENSMODP00000026851 External link oo SF
  oo PF
ENSMODP00000020895 External link oo SF
  oo PF
ENSMODP00000015032 External link oo SF
  oo PF
ENSMODP00000020940 External link oo SF
  oo PF
ENSMODP00000010015 External link oo SF
  oo PF
ENSMODP00000012647 External link oo SF
  oo PF
ENSMODP00000018639 External link oo SF
  oo PF
ENSMODP00000024834 External link oo SF
  oo PF
ENSMODP00000002376 External link oo SF
  oo PF
ENSMODP00000024651 External link oo SF
  oo PF
ENSMODP00000016064 External link oo SF
  oo PF
ENSMODP00000017807 External link oo SF
  oo PF
ENSMODP00000020272 External link oo SF
  oo PF
ENSMODP00000014431 External link oo SF
  oo PF