DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Monodelphis domestica 49_5d (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSMODP00000012994 External link op SF
  op PF
ENSMODP00000023451 External link op SF
  op PF
ENSMODP00000000505 External link op SF
  op PF
ENSMODP00000004192 External link op SF
  op PF
ENSMODP00000035834 External link op SF
  op PF
ENSMODP00000004169 External link op SF
  op PF
ENSMODP00000004197 External link op SF
  op PF
ENSMODP00000004693 External link op SF
  op PF
ENSMODP00000004160 External link op SF
  op PF
ENSMODP00000012599 External link op SF
  op PF
ENSMODP00000022480 External link op SF
  op PF
ENSMODP00000016775 External link op SF
  op PF
ENSMODP00000036437 External link op SF
  op PF
ENSMODP00000015165 External link op SF
  op PF
ENSMODP00000004671 External link op SF
  op PF
ENSMODP00000014282 External link op SF
  op PF
ENSMODP00000037582 External link op SF
  op PF
ENSMODP00000032038 External link op SF
  op PF
ENSMODP00000013699 External link op SF
  op PF
ENSMODP00000010852 External link op SF
  op PF
ENSMODP00000021171 External link op SF
  op PF
ENSMODP00000015856 External link op SF
  op PF
ENSMODP00000026808 External link op SF
  op PF
ENSMODP00000021977 External link op SF
  op PF
ENSMODP00000004493 External link op SF
  op PF
ENSMODP00000030865 External link op SF
  op PF
ENSMODP00000001866 External link op SF
  op PF
ENSMODP00000034762 External link op SF
  op PF
ENSMODP00000016364 External link op SF
  op PF
ENSMODP00000037998 External link op SF
  op PF
ENSMODP00000016362 External link op SF
  op PF
ENSMODP00000020486 External link op SF
  op PF
ENSMODP00000004735 External link op SF
  op PF
ENSMODP00000004239 External link op SF
  op PF
ENSMODP00000008576 External link op SF
  op PF
ENSMODP00000004809 External link op SF
  op PF
ENSMODP00000028954 External link op SF
  op PF
ENSMODP00000023372 External link op SF
  op PF
ENSMODP00000001332 External link op SF
  op PF
ENSMODP00000019536 External link op SF
  op PF
ENSMODP00000000916 External link op SF
  op PF
ENSMODP00000011829 External link op SF
  op PF
ENSMODP00000004064 External link op SF
  op PF
ENSMODP00000034686 External link op SF
  op PF
ENSMODP00000004911 External link op SF
  op PF
ENSMODP00000004915 External link op SF
  op PF
ENSMODP00000011832 External link op SF
  op PF
ENSMODP00000024560 External link op SF
  op PF
ENSMODP00000024558 External link op SF
  op PF
ENSMODP00000015947 External link op SF
  op PF