DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ochotona princeps 49_1 (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSOPRP00000011533 External link oq SF
  oq PF
ENSOPRP00000003009 External link oq SF
  oq PF
ENSOPRP00000011909 External link oq SF
  oq PF
ENSOPRP00000010133 External link oq SF
  oq PF
ENSOPRP00000010146 External link oq SF
  oq PF
ENSOPRP00000005751 External link oq SF
  oq PF
ENSOPRP00000007941 External link oq SF
  oq PF
ENSOPRP00000003686 External link oq SF
  oq PF
ENSOPRP00000014032 External link oq SF
  oq PF
ENSOPRP00000007990 External link oq SF
  oq PF
ENSOPRP00000000047 External link oq SF
  oq PF
ENSOPRP00000001918 External link oq SF
  oq PF
ENSOPRP00000007582 External link oq SF
  oq PF
ENSOPRP00000002067 External link oq SF
  oq PF
ENSOPRP00000011327 External link oq SF
  oq PF
ENSOPRP00000003575 External link oq SF
  oq PF
ENSOPRP00000002220 External link oq SF
  oq PF
ENSOPRP00000002055 External link oq SF
  oq PF
ENSOPRP00000005776 External link oq SF
  oq PF
ENSOPRP00000011216 External link oq SF
  oq PF
ENSOPRP00000005712 External link oq SF
  oq PF
ENSOPRP00000008982 External link oq SF
  oq PF
ENSOPRP00000013146 External link oq SF
  oq PF
ENSOPRP00000005727 External link oq SF
  oq PF
ENSOPRP00000009463 External link oq SF
  oq PF
ENSOPRP00000008933 External link oq SF
  oq PF
ENSOPRP00000014249 External link oq SF
  oq PF
ENSOPRP00000010942 External link oq SF
  oq PF
ENSOPRP00000011971 External link oq SF
  oq PF
ENSOPRP00000000138 External link oq SF
  oq PF
ENSOPRP00000012135 External link oq SF
  oq PF
ENSOPRP00000012148 External link oq SF
  oq PF
ENSOPRP00000010038 External link oq SF
  oq PF
ENSOPRP00000008555 External link oq SF
  oq PF
ENSOPRP00000003568 External link oq SF
  oq PF
ENSOPRP00000003148 External link oq SF
  oq PF
ENSOPRP00000003781 External link oq SF
  oq PF
ENSOPRP00000011159 External link oq SF
  oq PF
ENSOPRP00000005890 External link oq SF
  oq PF
ENSOPRP00000011053 External link oq SF
  oq PF
ENSOPRP00000006306 External link oq SF
  oq PF
ENSOPRP00000011386 External link oq SF
  oq PF
ENSOPRP00000013867 External link oq SF
  oq PF
ENSOPRP00000013039 External link oq SF
  oq PF
ENSOPRP00000005142 External link oq SF
  oq PF
ENSOPRP00000014857 External link oq SF
  oq PF
ENSOPRP00000009537 External link oq SF
  oq PF
ENSOPRP00000011818 External link oq SF
  oq PF
ENSOPRP00000004698 External link oq SF
  oq PF
ENSOPRP00000011278 External link oq SF
  oq PF