DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Oryza sativa ssp. japonica 5.0
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa
source (downloaded: 2007-02-22)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
LOC_Os11g06420.1|12011.m28739|protein External link os SF
  os PF
LOC_Os12g27980.1|12012.m06614|protein External link os SF
  os PF
LOC_Os03g50980.1|12003.m10080|protein External link os SF
  os PF
LOC_Os05g03430.1|12005.m27681|protein External link os SF
  os PF
LOC_Os05g03430.2|12005.m04877|protein External link os SF
  os PF
LOC_Os01g14370.1|12001.m42940|protein External link os SF
  os PF
LOC_Os02g04490.1|12002.m05798|protein External link os SF
  os PF
LOC_Os04g40630.3|12004.m35341|protein External link os SF
  os PF
LOC_Os01g14370.2|12001.m08042|protein External link os SF
  os PF
LOC_Os04g40630.4|12004.m101558|protein External link os SF
  os PF
LOC_Os06g49130.1|12006.m09437|protein External link os SF
  os PF
LOC_Os04g40630.2|12004.m35340|protein External link os SF
  os PF
LOC_Os06g49130.2|12006.m091780|protein External link os SF
  os PF
LOC_Os05g03430.3|12005.m083605|protein External link os SF
  os PF
LOC_Os06g12400.1|12006.m05957|protein External link os SF
  os PF
LOC_Os02g05450.1|12002.m05893|protein External link os SF
  os PF
LOC_Os07g46690.1|12007.m08886|protein External link os SF
  os PF
LOC_Os06g06870.1|12006.m05411|protein External link os SF
  os PF
LOC_Os03g57260.2|12003.m10644|protein External link os SF
  os PF
LOC_Os10g32070.1|12010.m06055|protein External link os SF
  os PF
LOC_Os06g48534.1|12006.m91852|protein External link os SF
  os PF
LOC_Os02g56250.1|12002.m10648|protein External link os SF
  os PF
LOC_Os03g61570.2|12003.m11038|protein External link os SF
  os PF
LOC_Os11g08410.1|12011.m05037|protein External link os SF
  os PF
LOC_Os03g52450.1|12003.m101486|protein External link os SF
  os PF
LOC_Os05g49280.1|12005.m08998|protein External link os SF
  os PF
LOC_Os12g07120.1|12012.m073776|protein External link os SF
  os PF
LOC_Os02g05510.2|12002.m33554|protein External link os SF
  os PF
LOC_Os05g50270.1|12005.m09096|protein External link os SF
  os PF
LOC_Os03g08370.1|12003.m06345|protein External link os SF
  os PF
LOC_Os02g12790.1|12002.m06526|protein External link os SF
  os PF
LOC_Os05g44400.1|12005.m08566|protein External link os SF
  os PF
LOC_Os01g47360.1|12001.m10931|protein External link os SF
  os PF
LOC_Os03g52450.2|12003.m10221|protein External link os SF
  os PF
LOC_Os02g05510.1|12002.m05899|protein External link os SF
  os PF
LOC_Os03g47970.2|12003.m78883|protein External link os SF
  os PF
LOC_Os02g43150.1|12002.m09350|protein External link os SF
  os PF
LOC_Os07g42400.2|12007.m29004|protein External link os SF
  os PF
LOC_Os01g74540.1|12001.m13479|protein External link os SF
  os PF
LOC_Os03g03850.1|12003.m05917|protein External link os SF
  os PF
LOC_Os01g54210.1|12001.m11585|protein External link os SF
  os PF
LOC_Os12g42970.1|12012.m08075|protein External link os SF
  os PF
LOC_Os03g05160.1|12003.m06040|protein External link os SF
  os PF
LOC_Os12g07120.2|12012.m04702|protein External link os SF
  os PF
LOC_Os03g47970.1|12003.m78812|protein External link os SF
  os PF
LOC_Os02g05510.3|12002.m33553|protein External link os SF
  os PF
LOC_Os06g37450.1|12006.m32103|protein External link os SF
  os PF
LOC_Os07g42400.1|12007.m08473|protein External link os SF
  os PF
LOC_Os10g40810.1|12010.m06851|protein External link os SF
  os PF
LOC_Os02g43150.2|12002.m100295|protein External link os SF
  os PF