DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ostreococcus tauri
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Mamiellaceae; Ostreococcus
source (downloaded: 2007-02-16)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Ostta4|12951|fgenesh1_pg.C_Chr_11.0001000216 External link ou SF
  ou PF
jgi|Ostta4|13192|fgenesh1_pg.C_Chr_12.0001000211 External link ou SF
  ou PF No hits
jgi|Ostta4|13137|fgenesh1_pg.C_Chr_12.0001000156 External link ou SF
  ou PF No hits
jgi|Ostta4|11798|fgenesh1_pg.C_Chr_07.0001000239 External link ou SF
  ou PF
jgi|Ostta4|16654|e_gw1.04.00.34.1 External link ou SF
  ou PF
jgi|Ostta4|23937|estExt_fgenesh1_pg.C_Chr_07.00010219 External link ou SF
  ou PF
jgi|Ostta4|11601|fgenesh1_pg.C_Chr_07.0001000042 External link ou SF
  ou PF
jgi|Ostta4|31552|0300010106 External link ou SF
  ou PF
jgi|Ostta4|34405|0800010292 External link ou SF
  ou PF
jgi|Ostta4|15144|e_gw1.01.00.699.1 External link ou SF
  ou PF
jgi|Ostta4|10052|fgenesh1_pg.C_Chr_02.0001000347 External link ou SF
  ou PF
jgi|Ostta4|37364|1700010040 External link ou SF
  ou PF No hits
jgi|Ostta4|16482|e_gw1.03.00.529.1 External link ou SF
  ou PF
jgi|Ostta4|6661|gw1.08.00.335.1 External link ou SF
  ou PF
jgi|Ostta4|36237|1300010209 External link ou SF
  ou PF
jgi|Ostta4|30470|0100010458 External link ou SF
  ou PF
jgi|Ostta4|7536|gw1.14.00.335.1 External link ou SF
  ou PF
jgi|Ostta4|23659|estExt_fgenesh1_pg.C_Chr_04.00010339 External link ou SF
  ou PF
jgi|Ostta4|23510|estExt_fgenesh1_pg.C_Chr_03.00010272 External link ou SF
  ou PF
jgi|Ostta4|33277|0600010124 External link ou SF
  ou PF
jgi|Ostta4|24566|estExt_fgenesh1_pg.C_Chr_16.00010090 External link ou SF
  ou PF
jgi|Ostta4|11992|fgenesh1_pg.C_Chr_08.0001000114 External link ou SF
  ou PF
jgi|Ostta4|13909|fgenesh1_pg.C_Chr_16.0001000014 External link ou SF
  ou PF
jgi|Ostta4|23721|estExt_fgenesh1_pg.C_Chr_05.00010153 External link ou SF
  ou PF
jgi|Ostta4|33483|0600010330 External link ou SF
  ou PF
jgi|Ostta4|34195|0800010082 External link ou SF
  ou PF
jgi|Ostta4|32080|0400010026 External link ou SF
  ou PF
jgi|Ostta4|31915|0300010469 External link ou SF
  ou PF
jgi|Ostta4|13601|fgenesh1_pg.C_Chr_14.0001000151 External link ou SF
  ou PF
jgi|Ostta4|21537|e_gw1.15.00.298.1 External link ou SF
  ou PF
jgi|Ostta4|34401|0800010288 External link ou SF
  ou PF
jgi|Ostta4|22651|e_gw1.20.00.75.1 External link ou SF
  ou PF
jgi|Ostta4|19752|e_gw1.10.00.278.1 External link ou SF
  ou PF
jgi|Ostta4|27606|estExt_gwp_GeneWisePlus.C_Chr_02.00010270 External link ou SF
  ou PF
jgi|Ostta4|19252|e_gw1.09.00.361.1 External link ou SF
  ou PF
jgi|Ostta4|17156|e_gw1.05.00.32.1 External link ou SF
  ou PF
jgi|Ostta4|6990|gw1.10.00.387.1 External link ou SF
  ou PF
jgi|Ostta4|7799|gw1.05.00.538.1 External link ou SF
  ou PF
jgi|Ostta4|33030|0500010395 External link ou SF
  ou PF
jgi|Ostta4|23226|estExt_fgenesh1_pg.C_Chr_01.00010348 External link ou SF
  ou PF
jgi|Ostta4|23304|estExt_fgenesh1_pg.C_Chr_02.00010074 External link ou SF
  ou PF
jgi|Ostta4|14410|fgenesh1_pg.C_Chr_18.0001000131 External link ou SF
  ou PF
jgi|Ostta4|35855|1200010153 External link ou SF
  ou PF No hits
jgi|Ostta4|23487|estExt_fgenesh1_pg.C_Chr_03.00010215 External link ou SF
  ou PF
jgi|Ostta4|11362|fgenesh1_pg.C_Chr_06.0001000137 External link ou SF
  ou PF No hits
jgi|Ostta4|10780|fgenesh1_pg.C_Chr_04.0001000291 External link ou SF
  ou PF
jgi|Ostta4|37809|1800010213 External link ou SF
  ou PF
jgi|Ostta4|31406|0200010737 External link ou SF
  ou PF
jgi|Ostta4|30968|0200010299 External link ou SF
  ou PF No hits
jgi|Ostta4|36163|1300010135 External link ou SF
  ou PF