DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Monosiga brevicollis
Taxonomy: Eukaryota; Choanoflagellida; Codonosigidae; Monosiga
source (downloaded: 2007-07-07)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Monbr1|31046|estExt_fgenesh2_pg.C_20764 External link ov SF
  ov PF
jgi|Monbr1|9670|fgenesh1_pg.scaffold_16000139 External link ov SF
  ov PF
jgi|Monbr1|220|gw1.6.11.1 External link ov SF
  ov PF
jgi|Monbr1|31004|estExt_fgenesh2_pg.C_20678 External link ov SF
  ov PF
jgi|Monbr1|33587|estExt_fgenesh2_pg.C_210098 External link ov SF
  ov PF
jgi|Monbr1|33447|estExt_fgenesh2_pg.C_190153 External link ov SF
  ov PF
jgi|Monbr1|30999|estExt_fgenesh2_pg.C_20664 External link ov SF
  ov PF
jgi|Monbr1|35482|estExt_fgenesh1_pg.C_20240 External link ov SF
  ov PF
jgi|Monbr1|25820|fgenesh2_pg.scaffold_11000220 External link ov SF
  ov PF
jgi|Monbr1|34432|estExt_fgenesh2_pg.C_370021 External link ov SF
  ov PF
jgi|Monbr1|37070|estExt_fgenesh1_pg.C_100084 External link ov SF
  ov PF
jgi|Monbr1|32981|estExt_fgenesh2_pg.C_150046 External link ov SF
  ov PF
jgi|Monbr1|28160|fgenesh2_pg.scaffold_24000049 External link ov SF
  ov PF
jgi|Monbr1|26487|fgenesh2_pg.scaffold_14000153 External link ov SF
  ov PF
jgi|Monbr1|7806|fgenesh1_pg.scaffold_8000233 External link ov SF
  ov PF
jgi|Monbr1|35746|estExt_fgenesh1_pg.C_20788 External link ov SF
  ov PF
jgi|Monbr1|3760|gw1.2.938.1 External link ov SF
  ov PF
jgi|Monbr1|12676|fgenesh1_pg.scaffold_43000020 External link ov SF
  ov PF
jgi|Monbr1|24700|fgenesh2_pg.scaffold_7000248 External link ov SF
  ov PF
jgi|Monbr1|11831|fgenesh1_pg.scaffold_32000062 External link ov SF
  ov PF
jgi|Monbr1|30763|estExt_fgenesh2_pg.C_20142 External link ov SF
  ov PF No hits
jgi|Monbr1|7353|fgenesh1_pg.scaffold_7000085 External link ov SF
  ov PF
jgi|Monbr1|10821|fgenesh1_pg.scaffold_24000035 External link ov SF
  ov PF
jgi|Monbr1|32134|estExt_fgenesh2_pg.C_80066 External link ov SF
  ov PF
jgi|Monbr1|32717|estExt_fgenesh2_pg.C_120214 External link ov SF
  ov PF
jgi|Monbr1|25630|fgenesh2_pg.scaffold_11000030 External link ov SF
  ov PF
jgi|Monbr1|31781|estExt_fgenesh2_pg.C_50338 External link ov SF
  ov PF
jgi|Monbr1|38713|estExt_fgenesh1_pg.C_300039 External link ov SF
  ov PF
jgi|Monbr1|32733|estExt_fgenesh2_pg.C_130012 External link ov SF
  ov PF
jgi|Monbr1|38964|estExt_fgenesh1_pg.C_350020 External link ov SF
  ov PF
jgi|Monbr1|33265|estExt_fgenesh2_pg.C_170131 External link ov SF
  ov PF
jgi|Monbr1|39041|estExt_fgenesh1_pg.C_370053 External link ov SF
  ov PF
jgi|Monbr1|22989|fgenesh2_pg.scaffold_3000345 External link ov SF
  ov PF
jgi|Monbr1|1144|gw1.3.222.1 External link ov SF
  ov PF
jgi|Monbr1|3712|gw1.4.553.1 External link ov SF
  ov PF
jgi|Monbr1|37624|estExt_fgenesh1_pg.C_150048 External link ov SF
  ov PF
jgi|Monbr1|9357|fgenesh1_pg.scaffold_15000047 External link ov SF
  ov PF
jgi|Monbr1|8137|fgenesh1_pg.scaffold_9000267 External link ov SF
  ov PF
jgi|Monbr1|11770|fgenesh1_pg.scaffold_32000001 External link ov SF
  ov PF
jgi|Monbr1|5003|fgenesh1_pg.scaffold_2000319 External link ov SF
  ov PF
jgi|Monbr1|8858|fgenesh1_pg.scaffold_12000223 External link ov SF
  ov PF
jgi|Monbr1|9893|fgenesh1_pg.scaffold_17000166 External link ov SF
  ov PF
jgi|Monbr1|27791|fgenesh2_pg.scaffold_21000126 External link ov SF
  ov PF
jgi|Monbr1|32666|estExt_fgenesh2_pg.C_120125 External link ov SF
  ov PF
jgi|Monbr1|11637|fgenesh1_pg.scaffold_30000098 External link ov SF
  ov PF
jgi|Monbr1|32951|estExt_fgenesh2_pg.C_140216 External link ov SF
  ov PF
jgi|Monbr1|12796|fgenesh1_pg.scaffold_46000006 External link ov SF
  ov PF
jgi|Monbr1|11172|fgenesh1_pg.scaffold_26000135 External link ov SF
  ov PF
jgi|Monbr1|38380|estExt_fgenesh1_pg.C_240036 External link ov SF
  ov PF
jgi|Monbr1|32652|estExt_fgenesh2_pg.C_120091 External link ov SF
  ov PF