DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ostreococcus lucimarinus CCE9901
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Mamiellaceae; Ostreococcus
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Ost9901_3|25332|estExt_fgenesh1_pg.C_Chr_120163 External link oz SF
  oz PF No hits
jgi|Ost9901_3|24443|estExt_fgenesh1_pg.C_Chr_40257 External link oz SF
  oz PF
jgi|Ost9901_3|89717|ost_20_007_029 External link oz SF
  oz PF
jgi|Ost9901_3|95019|C_Chr_12000088 External link oz SF
  oz PF
jgi|Ost9901_3|93058|ost_07_016_033 External link oz SF
  oz PF
jgi|Ost9901_3|30438|eugene.0300010114 External link oz SF
  oz PF
jgi|Ost9901_3|14167|fgenesh1_pg.C_Chr_2000110 External link oz SF
  oz PF
jgi|Ost9901_3|15409|fgenesh1_pg.C_Chr_5000161 External link oz SF
  oz PF
jgi|Ost9901_3|32466|eugene.0700010063 External link oz SF
  oz PF
jgi|Ost9901_3|25644|estExt_fgenesh1_pg.C_Chr_160021 External link oz SF
  oz PF
jgi|Ost9901_3|93136|ost_08_010_039 External link oz SF
  oz PF
jgi|Ost9901_3|32750|eugene.0700010347 External link oz SF
  oz PF
jgi|Ost9901_3|28580|eugene.1900010066 External link oz SF
  oz PF
jgi|Ost9901_3|31440|eugene.0400010516 External link oz SF
  oz PF
jgi|Ost9901_3|29140|eugene.0100010534 External link oz SF
  oz PF
jgi|Ost9901_3|24295|estExt_fgenesh1_pg.C_Chr_30371 External link oz SF
  oz PF
jgi|Ost9901_3|44336|e_gwEuk.11.338.1 External link oz SF
  oz PF
jgi|Ost9901_3|8400|gwEuk.16.280.1 External link oz SF
  oz PF No hits
jgi|Ost9901_3|93618|ost_13_009_028 External link oz SF
  oz PF
jgi|Ost9901_3|9185|gwEuk.8.504.1 External link oz SF
  oz PF
jgi|Ost9901_3|34044|e_gwEuk.3.609.1 External link oz SF
  oz PF
jgi|Ost9901_3|94161|ost_21_006_044 External link oz SF
  oz PF
jgi|Ost9901_3|9237|gwEuk.4.617.1 External link oz SF
  oz PF
jgi|Ost9901_3|17981|fgenesh1_pg.C_Chr_14000027 External link oz SF
  oz PF
jgi|Ost9901_3|9011|gwEuk.20.448.1 External link oz SF
  oz PF
jgi|Ost9901_3|30700|eugene.0300010376 External link oz SF
  oz PF
jgi|Ost9901_3|23938|estExt_fgenesh1_pg.C_Chr_10369 External link oz SF
  oz PF
jgi|Ost9901_3|5500|gwEuk.1.479.1 External link oz SF
  oz PF
jgi|Ost9901_3|24922|estExt_fgenesh1_pg.C_Chr_80112 External link oz SF
  oz PF
jgi|Ost9901_3|92132|ost_01_013_052 External link oz SF
  oz PF
jgi|Ost9901_3|32237|eugene.0600010296 External link oz SF
  oz PF
jgi|Ost9901_3|9256|gwEuk.18.57.1 External link oz SF
  oz PF
jgi|Ost9901_3|30929|eugene.0400010005 External link oz SF
  oz PF
jgi|Ost9901_3|26252|eugene.1000010286 External link oz SF
  oz PF
jgi|Ost9901_3|29509|eugene.2000010215 External link oz SF
  oz PF
jgi|Ost9901_3|8975|gwEuk.14.421.1 External link oz SF
  oz PF
jgi|Ost9901_3|42726|e_gwEuk.8.148.1 External link oz SF
  oz PF
jgi|Ost9901_3|30146|eugene.0200010333 External link oz SF
  oz PF
jgi|Ost9901_3|30136|eugene.0200010323 External link oz SF
  oz PF
jgi|Ost9901_3|8561|gwEuk.19.100.1 External link oz SF
  oz PF
jgi|Ost9901_3|38105|e_gwEuk.10.287.1 External link oz SF
  oz PF
jgi|Ost9901_3|19230|fgenesh1_pg.C_Chr_21000073 External link oz SF
  oz PF
jgi|Ost9901_3|17878|fgenesh1_pg.C_Chr_13000162 External link oz SF
  oz PF
jgi|Ost9901_3|34891|e_gwEuk.9.410.1 External link oz SF
  oz PF
jgi|Ost9901_3|40769|e_gwEuk.15.293.1 External link oz SF
  oz PF
jgi|Ost9901_3|31513|eugene.0500010050 External link oz SF
  oz PF
jgi|Ost9901_3|24137|estExt_fgenesh1_pg.C_Chr_20302 External link oz SF
  oz PF
jgi|Ost9901_3|9540|gwEuk.5.576.1 External link oz SF
  oz PF
jgi|Ost9901_3|27999|eugene.1600010055 External link oz SF
  oz PF
jgi|Ost9901_3|26932|eugene.1200010277 External link oz SF
  oz PF