DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Populus trichocarpa 1.1
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Salicaceae; Saliceae; Populus
source (downloaded: 2006-10-05)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Poptr1_1|294799|gw1.70.252.1 External link pt SF
  pt PF
jgi|Poptr1_1|798477|fgenesh4_pm.C_LG_II000166 External link pt SF
  pt PF
jgi|Poptr1_1|294068|gw1.66.741.1 External link pt SF
  pt PF
jgi|Poptr1_1|204260|gw1.IX.4725.1 External link pt SF
  pt PF
jgi|Poptr1_1|227872|gw1.X.2569.1 External link pt SF
  pt PF
jgi|Poptr1_1|828090|estExt_fgenesh4_pg.C_1350050 External link pt SF
  pt PF
jgi|Poptr1_1|803030|fgenesh4_pm.C_LG_VII000516 External link pt SF
  pt PF
jgi|Poptr1_1|826053|estExt_fgenesh4_pg.C_LG_XVIII1192 External link pt SF
  pt PF
jgi|Poptr1_1|560666|eugene3.00060625 External link pt SF
  pt PF
jgi|Poptr1_1|200201|gw1.IX.666.1 External link pt SF
  pt PF
jgi|Poptr1_1|796233|fgenesh4_pg.C_scaffold_22094000001 External link pt SF
  pt PF
jgi|Poptr1_1|569357|eugene3.00120010 External link pt SF
  pt PF
jgi|Poptr1_1|557289|eugene3.00090549 External link pt SF
  pt PF
jgi|Poptr1_1|752838|fgenesh4_pg.C_LG_I002441 External link pt SF
  pt PF
jgi|Poptr1_1|571221|eugene3.00130585 External link pt SF
  pt PF
jgi|Poptr1_1|286296|gw1.40.56.1 External link pt SF
  pt PF
jgi|Poptr1_1|782963|fgenesh4_pg.C_scaffold_77000039 External link pt SF
  pt PF
jgi|Poptr1_1|562361|eugene3.00070299 External link pt SF
  pt PF
jgi|Poptr1_1|563735|eugene3.00080330 External link pt SF
  pt PF
jgi|Poptr1_1|558987|eugene3.00050602 External link pt SF
  pt PF
jgi|Poptr1_1|558983|eugene3.00050598 External link pt SF
  pt PF
jgi|Poptr1_1|828052|estExt_fgenesh4_pg.C_1330084 External link pt SF
  pt PF
jgi|Poptr1_1|653902|grail3.0013019801 External link pt SF
  pt PF
jgi|Poptr1_1|586229|eugene3.191840001 External link pt SF
  pt PF
jgi|Poptr1_1|577294|eugene3.00170036 External link pt SF
  pt PF
jgi|Poptr1_1|411182|gw1.II.2517.1 External link pt SF
  pt PF
jgi|Poptr1_1|664385|grail3.0061016001 External link pt SF
  pt PF
jgi|Poptr1_1|573903|eugene3.00190377 External link pt SF
  pt PF
jgi|Poptr1_1|562360|eugene3.00070298 External link pt SF
  pt PF
jgi|Poptr1_1|655400|grail3.0019026502 External link pt SF
  pt PF
jgi|Poptr1_1|814881|estExt_fgenesh4_pg.C_LG_I0470 External link pt SF
  pt PF
jgi|Poptr1_1|228902|gw1.X.3599.1 External link pt SF
  pt PF
jgi|Poptr1_1|171756|gw1.I.356.1 External link pt SF
  pt PF
jgi|Poptr1_1|551709|eugene3.00021024 External link pt SF
  pt PF
jgi|Poptr1_1|589916|eugene3.00290099 External link pt SF
  pt PF
jgi|Poptr1_1|833910|estExt_fgenesh4_pm.C_LG_X0958 External link pt SF
  pt PF
jgi|Poptr1_1|643943|grail3.0003097601 External link pt SF
  pt PF
jgi|Poptr1_1|802380|fgenesh4_pm.C_LG_VI000727 External link pt SF
  pt PF
jgi|Poptr1_1|758356|fgenesh4_pg.C_LG_III001898 External link pt SF
  pt PF
jgi|Poptr1_1|195659|gw1.IV.748.1 External link pt SF
  pt PF
jgi|Poptr1_1|414447|gw1.III.1550.1 External link pt SF
  pt PF
jgi|Poptr1_1|822568|estExt_fgenesh4_pg.C_LG_X2015 External link pt SF
  pt PF
jgi|Poptr1_1|649333|grail3.0001038001 External link pt SF
  pt PF
jgi|Poptr1_1|294112|gw1.66.785.1 External link pt SF
  pt PF
jgi|Poptr1_1|409569|gw1.II.904.1 External link pt SF
  pt PF
jgi|Poptr1_1|264796|gw1.118.284.1 External link pt SF
  pt PF
jgi|Poptr1_1|207143|gw1.V.2544.1 External link pt SF
  pt PF
jgi|Poptr1_1|593881|eugene3.00570125 External link pt SF
  pt PF
jgi|Poptr1_1|219245|gw1.VII.3550.1 External link pt SF
  pt PF
jgi|Poptr1_1|260610|gw1.XVIII.1151.1 External link pt SF
  pt PF