DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Physcomitrella patens subsp. patens
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
source (downloaded: 2007-07-07)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Phypa1_1|103531|fgenesh1_pg.scaffold_2883000002 External link pw SF
  pw PF
jgi|Phypa1_1|186998|estExt_gwp_gw1.C_1000024 External link pw SF
  pw PF
jgi|Phypa1_1|198425|estExt_gwp_gw1.C_3250048 External link pw SF
  pw PF
jgi|Phypa1_1|165698|estExt_fgenesh1_pg.C_940024 External link pw SF
  pw PF
jgi|Phypa1_1|159935|estExt_fgenesh1_pg.C_160242 External link pw SF
  pw PF
jgi|Phypa1_1|52|gw1.462.1.1 External link pw SF
  pw PF
jgi|Phypa1_1|10222|gw1.193.3.1 External link pw SF
  pw PF
jgi|Phypa1_1|75761|fgenesh1_pg.scaffold_55000024 External link pw SF
  pw PF
jgi|Phypa1_1|170895|estExt_fgenesh1_pg.C_2670037 External link pw SF
  pw PF
jgi|Phypa1_1|159214|estExt_fgenesh1_pg.C_100194 External link pw SF
  pw PF
jgi|Phypa1_1|95550|fgenesh1_pg.scaffold_282000028 External link pw SF
  pw PF
jgi|Phypa1_1|194363|estExt_gwp_gw1.C_2150073 External link pw SF
  pw PF
jgi|Phypa1_1|39119|gw1.32.153.1 External link pw SF
  pw PF
jgi|Phypa1_1|39118|gw1.241.61.1 External link pw SF
  pw PF
jgi|Phypa1_1|140427|e_gw1.167.135.1 External link pw SF
  pw PF
jgi|Phypa1_1|39123|gw1.32.154.1 External link pw SF
  pw PF
jgi|Phypa1_1|159137|estExt_fgenesh1_pg.C_90243 External link pw SF
  pw PF
jgi|Phypa1_1|135573|e_gw1.121.107.1 External link pw SF
  pw PF
jgi|Phypa1_1|166660|estExt_fgenesh1_pg.C_1210016 External link pw SF
  pw PF
jgi|Phypa1_1|16797|gw1.68.123.1 External link pw SF
  pw PF
jgi|Phypa1_1|34911|gw1.241.56.1 External link pw SF
  pw PF
jgi|Phypa1_1|173099|estExt_fgenesh1_pg.C_4100005 External link pw SF
  pw PF
jgi|Phypa1_1|232610|fgenesh2_pm.scaffold_111000001 External link pw SF
  pw PF
jgi|Phypa1_1|64713|fgenesh1_pg.scaffold_3000165 External link pw SF
  pw PF
jgi|Phypa1_1|57561|fgenesh1_pm.scaffold_69000012 External link pw SF
  pw PF
jgi|Phypa1_1|166697|estExt_fgenesh1_pg.C_1220019 External link pw SF
  pw PF
jgi|Phypa1_1|145290|e_gw1.226.30.1 External link pw SF
  pw PF
jgi|Phypa1_1|34788|gw1.42.165.1 External link pw SF
  pw PF
jgi|Phypa1_1|87880|fgenesh1_pg.scaffold_162000076 External link pw SF
  pw PF
jgi|Phypa1_1|167193|estExt_fgenesh1_pg.C_1380108 External link pw SF
  pw PF
jgi|Phypa1_1|72964|fgenesh1_pg.scaffold_39000134 External link pw SF
  pw PF
jgi|Phypa1_1|162343|estExt_fgenesh1_pg.C_420046 External link pw SF
  pw PF
jgi|Phypa1_1|61926|fgenesh1_pm.scaffold_495000003 External link pw SF
  pw PF
jgi|Phypa1_1|155610|e_gw1.475.3.1 External link pw SF
  pw PF
jgi|Phypa1_1|197420|estExt_gwp_gw1.C_2940004 External link pw SF
  pw PF
jgi|Phypa1_1|96854|fgenesh1_pg.scaffold_313000006 External link pw SF
  pw PF
jgi|Phypa1_1|103491|fgenesh1_pg.scaffold_2670000001 External link pw SF
  pw PF
jgi|Phypa1_1|103184|fgenesh1_pg.scaffold_1558000001 External link pw SF
  pw PF
jgi|Phypa1_1|103838|fgenesh1_pg.scaffold_5306000001 External link pw SF
  pw PF
jgi|Phypa1_1|94754|fgenesh1_pg.scaffold_267000029 External link pw SF
  pw PF
jgi|Phypa1_1|140819|e_gw1.171.4.1 External link pw SF
  pw PF
jgi|Phypa1_1|191533|estExt_gwp_gw1.C_1630046 External link pw SF
  pw PF
jgi|Phypa1_1|231108|fgenesh2_pg.scaffold_122000045 External link pw SF
  pw PF
jgi|Phypa1_1|39538|gw1.81.151.1 External link pw SF
  pw PF
jgi|Phypa1_1|87956|fgenesh1_pg.scaffold_163000049 External link pw SF
  pw PF
jgi|Phypa1_1|90569|fgenesh1_pg.scaffold_198000079 External link pw SF
  pw PF
jgi|Phypa1_1|104526|estExt_fgenesh1_pm.C_80015 External link pw SF
  pw PF
jgi|Phypa1_1|109826|estExt_fgenesh1_kg.C_550007 External link pw SF
  pw PF
jgi|Phypa1_1|179228|estExt_gwp_gw1.C_340302 External link pw SF
  pw PF
jgi|Phypa1_1|166549|estExt_fgenesh1_pg.C_1180093 External link pw SF
  pw PF