DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Macaca mulatta 49_10h (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSMMUP00000010134 External link r2 SF
  r2 PF
ENSMMUP00000029076 External link r2 SF
  r2 PF
ENSMMUP00000019489 External link r2 SF
  r2 PF
ENSMMUP00000003435 External link r2 SF
  r2 PF
ENSMMUP00000025085 External link r2 SF
  r2 PF
ENSMMUP00000017639 External link r2 SF
  r2 PF
ENSMMUP00000023467 External link r2 SF
  r2 PF
ENSMMUP00000013956 External link r2 SF
  r2 PF
ENSMMUP00000009704 External link r2 SF
  r2 PF
ENSMMUP00000015997 External link r2 SF
  r2 PF
ENSMMUP00000005576 External link r2 SF
  r2 PF
ENSMMUP00000021776 External link r2 SF
  r2 PF
ENSMMUP00000003584 External link r2 SF
  r2 PF
ENSMMUP00000008108 External link r2 SF
  r2 PF
ENSMMUP00000014947 External link r2 SF
  r2 PF
ENSMMUP00000028322 External link r2 SF
  r2 PF
ENSMMUP00000021414 External link r2 SF
  r2 PF
ENSMMUP00000037841 External link r2 SF
  r2 PF
ENSMMUP00000032686 External link r2 SF
  r2 PF
ENSMMUP00000001192 External link r2 SF
  r2 PF
ENSMMUP00000034157 External link r2 SF
  r2 PF
ENSMMUP00000014425 External link r2 SF
  r2 PF
ENSMMUP00000021990 External link r2 SF
  r2 PF
ENSMMUP00000004330 External link r2 SF
  r2 PF
ENSMMUP00000005999 External link r2 SF
  r2 PF
ENSMMUP00000015356 External link r2 SF
  r2 PF
ENSMMUP00000040499 External link r2 SF
  r2 PF
ENSMMUP00000015026 External link r2 SF
  r2 PF
ENSMMUP00000016079 External link r2 SF
  r2 PF
ENSMMUP00000008291 External link r2 SF
  r2 PF
ENSMMUP00000002106 External link r2 SF
  r2 PF
ENSMMUP00000004894 External link r2 SF
  r2 PF
ENSMMUP00000006987 External link r2 SF
  r2 PF
ENSMMUP00000034710 External link r2 SF
  r2 PF
ENSMMUP00000015805 External link r2 SF
  r2 PF
ENSMMUP00000002989 External link r2 SF
  r2 PF
ENSMMUP00000040166 External link r2 SF
  r2 PF
ENSMMUP00000025243 External link r2 SF
  r2 PF
ENSMMUP00000028148 External link r2 SF
  r2 PF
ENSMMUP00000009115 External link r2 SF
  r2 PF
ENSMMUP00000021633 External link r2 SF
  r2 PF
ENSMMUP00000023147 External link r2 SF
  r2 PF
ENSMMUP00000031505 External link r2 SF
  r2 PF
ENSMMUP00000029275 External link r2 SF
  r2 PF
ENSMMUP00000021273 External link r2 SF
  r2 PF
ENSMMUP00000018609 External link r2 SF
  r2 PF
ENSMMUP00000003923 External link r2 SF
  r2 PF
ENSMMUP00000002638 External link r2 SF
  r2 PF
ENSMMUP00000016396 External link r2 SF
  r2 PF
ENSMMUP00000023410 External link r2 SF
  r2 PF