DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Carica papaya
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Caricaceae; Carica
source (downloaded: 2008-05-10)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
evm.TU.supercontig_146.5 r6 SF
  r6 PF
evm.TU.supercontig_6.132 r6 SF
  r6 PF
evm.TU.supercontig_130.40 r6 SF
  r6 PF
evm.TU.supercontig_10.17 r6 SF
  r6 PF
evm.TU.supercontig_601.2 r6 SF
  r6 PF
evm.TU.supercontig_818.3 r6 SF
  r6 PF
evm.TU.supercontig_95.11 r6 SF
  r6 PF
evm.TU.supercontig_139.76 r6 SF
  r6 PF
evm.TU.supercontig_84.8 r6 SF
  r6 PF
evm.TU.supercontig_3.363 r6 SF
  r6 PF
evm.TU.supercontig_546.1 r6 SF
  r6 PF
evm.TU.supercontig_42.184 r6 SF
  r6 PF
evm.TU.supercontig_21.35 r6 SF
  r6 PF
evm.TU.supercontig_48.133 r6 SF
  r6 PF
evm.TU.supercontig_151.51 r6 SF
  r6 PF
evm.TU.supercontig_130.63 r6 SF
  r6 PF
evm.TU.supercontig_3189.1 r6 SF
  r6 PF
evm.TU.supercontig_93.28 r6 SF
  r6 PF
evm.TU.supercontig_9.102 r6 SF
  r6 PF
evm.TU.supercontig_150.28 r6 SF
  r6 PF
evm.TU.supercontig_865.1 r6 SF
  r6 PF
evm.TU.supercontig_155.28 r6 SF
  r6 PF
evm.TU.supercontig_78.7 r6 SF
  r6 PF
evm.TU.supercontig_65.5 r6 SF
  r6 PF
evm.TU.supercontig_941.1 r6 SF
  r6 PF
evm.TU.supercontig_6.206 r6 SF
  r6 PF
evm.TU.supercontig_74.95 r6 SF
  r6 PF
evm.TU.supercontig_2.20 r6 SF
  r6 PF
evm.TU.supercontig_6.118 r6 SF
  r6 PF
evm.TU.supercontig_235.6 r6 SF
  r6 PF
evm.TU.supercontig_20.16 r6 SF
  r6 PF
evm.TU.contig_41047.1 r6 SF
  r6 PF
evm.TU.supercontig_161.1 r6 SF
  r6 PF
evm.TU.supercontig_6.32 r6 SF
  r6 PF
evm.TU.supercontig_14.159 r6 SF
  r6 PF
evm.TU.supercontig_163.32 r6 SF
  r6 PF
evm.TU.supercontig_4.49 r6 SF
  r6 PF
evm.TU.supercontig_51.84 r6 SF
  r6 PF
evm.TU.supercontig_53.94 r6 SF
  r6 PF
evm.TU.supercontig_30.114 r6 SF
  r6 PF
evm.TU.supercontig_1.105 r6 SF
  r6 PF No hits
evm.TU.supercontig_9.191 r6 SF
  r6 PF
evm.TU.supercontig_36.12 r6 SF
  r6 PF
evm.TU.supercontig_6.256 r6 SF
  r6 PF
evm.TU.supercontig_537.2 r6 SF
  r6 PF
evm.TU.supercontig_30.148 r6 SF
  r6 PF
evm.TU.supercontig_265.5 r6 SF
  r6 PF
evm.TU.supercontig_347.5 r6 SF
  r6 PF
evm.TU.contig_37906.1 r6 SF
  r6 PF
evm.TU.supercontig_50.73 r6 SF
  r6 PF