DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Phytophthora ramorum 1.0
Taxonomy: Eukaryota; stramenopiles; Oomycetes; Pythiales; Pythiaceae; Phytophthora
source (downloaded: 2005-09-08)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
80845 External link ra SF
  ra PF
77146 External link ra SF
  ra PF
82737 External link ra SF
  ra PF
79338 External link ra SF
  ra PF
78457 External link ra SF
  ra PF
85385 External link ra SF
  ra PF
79317 External link ra SF
  ra PF
76424 External link ra SF
  ra PF
84400 External link ra SF
  ra PF
47462 External link ra SF
  ra PF
76300 External link ra SF
  ra PF
76419 External link ra SF
  ra PF
76299 External link ra SF
  ra PF
73536 External link ra SF
  ra PF
76423 External link ra SF
  ra PF
77610 External link ra SF
  ra PF
76487 External link ra SF
  ra PF
76486 External link ra SF
  ra PF
80976 External link ra SF
  ra PF
76418 External link ra SF
  ra PF
42912 External link ra SF
  ra PF
76298 External link ra SF
  ra PF
76422 External link ra SF
  ra PF
82539 External link ra SF
  ra PF
75735 External link ra SF
  ra PF
76421 External link ra SF
  ra PF
76420 External link ra SF
  ra PF
79159 External link ra SF
  ra PF
86530 External link ra SF
  ra PF
74238 External link ra SF
  ra PF
81916 External link ra SF
  ra PF
48519 External link ra SF
  ra PF
83113 External link ra SF
  ra PF
52592 External link ra SF
  ra PF
83880 External link ra SF
  ra PF No hits
75531 External link ra SF
  ra PF
75689 External link ra SF
  ra PF No hits
75687 External link ra SF
  ra PF No hits
75752 External link ra SF
  ra PF
75297 External link ra SF
  ra PF
85824 External link ra SF
  ra PF
81163 External link ra SF
  ra PF
77318 External link ra SF
  ra PF
77796 External link ra SF
  ra PF
74602 External link ra SF
  ra PF
84529 External link ra SF
  ra PF
78530 External link ra SF
  ra PF
79157 External link ra SF
  ra PF
73254 External link ra SF
  ra PF
77236 External link ra SF
  ra PF