DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Trichoderma reesei 1.2
Taxonomy: Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Hypocrea
source (downloaded: 2005-09-08)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
10421 re SF
  re PF
10563 re SF
  re PF
39873 re SF
  re PF
40520 re SF
  re PF
43108 re SF
  re PF
46099 re SF
  re PF
33167 re SF
  re PF
36866 re SF
  re PF No hits
20746 re SF
  re PF
34193 re SF
  re PF
34318 re SF
  re PF
44869 re SF
  re PF
44237 re SF
  re PF
39599 re SF
  re PF
30225 re SF
  re PF
35456 re SF
  re PF
45832 re SF
  re PF
35387 re SF
  re PF
33338 re SF
  re PF
15021 re SF
  re PF
32519 re SF
  re PF
34808 re SF
  re PF
8869 re SF
  re PF
40469 re SF
  re PF
34157 re SF
  re PF
40369 re SF
  re PF
34912 re SF
  re PF
34566 re SF
  re PF
14729 re SF
  re PF
33063 re SF
  re PF
35175 re SF
  re PF
38750 re SF
  re PF
41918 re SF
  re PF
45240 re SF
  re PF
14837 re SF
  re PF
37481 re SF
  re PF
46177 re SF
  re PF
38351 re SF
  re PF
39978 re SF
  re PF
34523 re SF
  re PF
38281 re SF
  re PF
9266 re SF
  re PF
12113 re SF
  re PF
40878 re SF
  re PF
38941 re SF
  re PF
43053 re SF
  re PF
45224 re SF
  re PF
36054 re SF
  re PF
39579 re SF
  re PF No hits
40192 re SF
  re PF