DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ricinus communis Early Assembly
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
source (downloaded: 2007-07-25)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
33273.m000022 External link rk SF
  rk PF
27387.m000525 External link rk SF
  rk PF
30671.m000033 External link rk SF
  rk PF
29676.m001702 External link rk SF
  rk PF
30231.m003682 External link rk SF
  rk PF
30170.m014061 External link rk SF
  rk PF
29634.m002123 External link rk SF
  rk PF
29175.m000097 External link rk SF
  rk PF
57773.m000018 External link rk SF
  rk PF
30111.m000729 External link rk SF
  rk PF
29739.m003684 External link rk SF
  rk PF
27938.m000142 External link rk SF
  rk PF
30554.m000024 External link rk SF
  rk PF
30169.m006595 External link rk SF
  rk PF
29673.m000917 External link rk SF
  rk PF
28152.m000873 External link rk SF
  rk PF
29671.m000294 External link rk SF
  rk PF
29991.m000631 External link rk SF
  rk PF
47203.m000013 External link rk SF
  rk PF
30190.m011281 External link rk SF
  rk PF
27798.m000589 External link rk SF
  rk PF
29724.m000868 External link rk SF
  rk PF
27538.m000326 External link rk SF
  rk PF
30128.m008883 External link rk SF
  rk PF
29634.m002146 External link rk SF
  rk PF
28035.m000366 External link rk SF
  rk PF
29912.m005322 External link rk SF
  rk PF
29794.m003323 External link rk SF
  rk PF
29950.m001152 External link rk SF
  rk PF
30146.m003524 External link rk SF
  rk PF
29838.m001723 External link rk SF
  rk PF
30076.m004701 External link rk SF
  rk PF
27494.m000044 External link rk SF
  rk PF
30174.m008809 External link rk SF
  rk PF
29596.m000719 External link rk SF
  rk PF
29838.m001724 External link rk SF
  rk PF
30131.m007120 External link rk SF
  rk PF
27940.m000323 External link rk SF
  rk PF
29634.m002055 External link rk SF
  rk PF
29889.m003248 External link rk SF
  rk PF
29904.m003012 External link rk SF
  rk PF
29596.m000720 External link rk SF
  rk PF
30093.m000368 External link rk SF
  rk PF
29967.m000088 External link rk SF
  rk PF
28152.m000908 External link rk SF
  rk PF
29630.m000796 External link rk SF
  rk PF
30093.m000367 External link rk SF
  rk PF
28507.m000165 External link rk SF
  rk PF
29994.m000464 External link rk SF
  rk PF
29780.m001362 External link rk SF
  rk PF