DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Rattus norvegicus 49_34s (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Rattus; Rattus norvegicus
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSRNOP00000010583 External link rn SF
  rn PF
ENSRNOP00000020244 External link rn SF
  rn PF
ENSRNOP00000032876 External link rn SF
  rn PF
ENSRNOP00000010808 External link rn SF
  rn PF
ENSRNOP00000021828 External link rn SF
  rn PF
ENSRNOP00000054155 External link rn SF
  rn PF
ENSRNOP00000021779 External link rn SF
  rn PF
ENSRNOP00000021792 External link rn SF
  rn PF
ENSRNOP00000027242 External link rn SF
  rn PF
ENSRNOP00000009569 External link rn SF
  rn PF
ENSRNOP00000041369 External link rn SF
  rn PF
ENSRNOP00000012234 External link rn SF
  rn PF
ENSRNOP00000015623 External link rn SF
  rn PF
ENSRNOP00000001611 External link rn SF
  rn PF
ENSRNOP00000041935 External link rn SF
  rn PF
ENSRNOP00000031057 External link rn SF
  rn PF
ENSRNOP00000053825 External link rn SF
  rn PF
ENSRNOP00000039446 External link rn SF
  rn PF
ENSRNOP00000053821 External link rn SF
  rn PF
ENSRNOP00000017986 External link rn SF
  rn PF
ENSRNOP00000053828 External link rn SF
  rn PF
ENSRNOP00000051754 External link rn SF
  rn PF
ENSRNOP00000018237 External link rn SF
  rn PF
ENSRNOP00000014506 External link rn SF
  rn PF
ENSRNOP00000035079 External link rn SF
  rn PF
ENSRNOP00000033342 External link rn SF
  rn PF
ENSRNOP00000046656 External link rn SF
  rn PF
ENSRNOP00000050908 External link rn SF
  rn PF
ENSRNOP00000049928 External link rn SF
  rn PF
ENSRNOP00000049326 External link rn SF
  rn PF
ENSRNOP00000058121 External link rn SF
  rn PF
ENSRNOP00000015730 External link rn SF
  rn PF
ENSRNOP00000039898 External link rn SF
  rn PF
ENSRNOP00000027067 External link rn SF
  rn PF
ENSRNOP00000044547 External link rn SF
  rn PF
ENSRNOP00000000206 External link rn SF
  rn PF
ENSRNOP00000007079 External link rn SF
  rn PF
ENSRNOP00000045985 External link rn SF
  rn PF
ENSRNOP00000020904 External link rn SF
  rn PF
ENSRNOP00000020980 External link rn SF
  rn PF
ENSRNOP00000028363 External link rn SF
  rn PF
ENSRNOP00000010702 External link rn SF
  rn PF
ENSRNOP00000051974 External link rn SF
  rn PF
ENSRNOP00000042903 External link rn SF
  rn PF
ENSRNOP00000028091 External link rn SF
  rn PF
ENSRNOP00000012802 External link rn SF
  rn PF
ENSRNOP00000057423 External link rn SF
  rn PF
ENSRNOP00000027441 External link rn SF
  rn PF
ENSRNOP00000028813 External link rn SF
  rn PF
ENSRNOP00000028814 External link rn SF
  rn PF