DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Rattus norvegicus 49_34s (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Rattus; Rattus norvegicus
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSRNOP00000020244 External link ro SF
  ro PF
ENSRNOP00000010583 External link ro SF
  ro PF
ENSRNOP00000032876 External link ro SF
  ro PF
ENSRNOP00000054155 External link ro SF
  ro PF
ENSRNOP00000010808 External link ro SF
  ro PF
ENSRNOP00000021779 External link ro SF
  ro PF
ENSRNOP00000021792 External link ro SF
  ro PF
ENSRNOP00000027242 External link ro SF
  ro PF
ENSRNOP00000021828 External link ro SF
  ro PF
ENSRNOP00000009569 External link ro SF
  ro PF
ENSRNOP00000041369 External link ro SF
  ro PF
ENSRNOP00000012234 External link ro SF
  ro PF
ENSRNOP00000015623 External link ro SF
  ro PF
ENSRNOP00000001611 External link ro SF
  ro PF
ENSRNOP00000031057 External link ro SF
  ro PF
ENSRNOP00000053821 External link ro SF
  ro PF
ENSRNOP00000053828 External link ro SF
  ro PF
ENSRNOP00000050908 External link ro SF
  ro PF
ENSRNOP00000018237 External link ro SF
  ro PF
ENSRNOP00000014506 External link ro SF
  ro PF
ENSRNOP00000049326 External link ro SF
  ro PF
ENSRNOP00000015730 External link ro SF
  ro PF
ENSRNOP00000044547 External link ro SF
  ro PF
ENSRNOP00000007079 External link ro SF
  ro PF
ENSRNOP00000000206 External link ro SF
  ro PF
ENSRNOP00000020904 External link ro SF
  ro PF
ENSRNOP00000028363 External link ro SF
  ro PF
ENSRNOP00000028091 External link ro SF
  ro PF
ENSRNOP00000010702 External link ro SF
  ro PF
ENSRNOP00000057423 External link ro SF
  ro PF
ENSRNOP00000050100 External link ro SF
  ro PF
ENSRNOP00000023821 External link ro SF
  ro PF
ENSRNOP00000027441 External link ro SF
  ro PF
ENSRNOP00000028814 External link ro SF
  ro PF
ENSRNOP00000008817 External link ro SF
  ro PF
ENSRNOP00000044069 External link ro SF
  ro PF
ENSRNOP00000022953 External link ro SF
  ro PF
ENSRNOP00000013873 External link ro SF
  ro PF
ENSRNOP00000006163 External link ro SF
  ro PF
ENSRNOP00000003799 External link ro SF
  ro PF
ENSRNOP00000014452 External link ro SF
  ro PF
ENSRNOP00000009370 External link ro SF
  ro PF
ENSRNOP00000001883 External link ro SF
  ro PF
ENSRNOP00000014320 External link ro SF
  ro PF
ENSRNOP00000036967 External link ro SF
  ro PF
ENSRNOP00000007896 External link ro SF
  ro PF
ENSRNOP00000041633 External link ro SF
  ro PF
ENSRNOP00000026187 External link ro SF
  ro PF
ENSRNOP00000017240 External link ro SF
  ro PF
ENSRNOP00000038111 External link ro SF
  ro PF