DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Saccharomyces cerevisiae SGD
Taxonomy: Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
source (downloaded: 2005-09-22)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
YOR156C External link sc SF
Gene name: NFI1  sc PF
YDR409W External link sc SF
Gene name: SIZ1  sc PF
YMR021C External link sc SF
Gene name: MAC1  sc PF
YPR008W External link sc SF
Gene name: HAA1  sc PF
YGL166W External link sc SF
Gene name: CUP2  sc PF
YKR034W External link sc SF
Gene name: DAL80  sc PF
YLR013W External link sc SF
Gene name: GAT3  sc PF
YKL185W External link sc SF
Gene name: ASH1  sc PF
YMR136W External link sc SF
Gene name: GAT2  sc PF
YER040W External link sc SF
Gene name: GLN3  sc PF
YJL110C External link sc SF
Gene name: GZF3  sc PF
YPL021W External link sc SF
Gene name: ECM23  sc PF
YFL021W External link sc SF
Gene name: GAT1  sc PF
YIR013C External link sc SF
Gene name: GAT4  sc PF
YCR018C External link sc SF
Gene name: SRD1  sc PF
YBR239C External link sc SF
Gene name: YBR239C  sc PF
YML099C External link sc SF
Gene name: ARG81  sc PF
YMR280C External link sc SF
Gene name: CAT8  sc PF
YOR172W External link sc SF
Gene name: YRM1  sc PF
YPR196W External link sc SF
Gene name: YPR196W  sc PF
YIR023W External link sc SF
Gene name: DAL81  sc PF
YPL133C External link sc SF
Gene name: RDS2  sc PF
YKL038W External link sc SF
Gene name: RGT1  sc PF
YDL170W External link sc SF
Gene name: UGA3  sc PF
YBR150C External link sc SF
Gene name: TBS1  sc PF
YLR266C External link sc SF
Gene name: PDR8  sc PF
YHR178W External link sc SF
Gene name: STB5  sc PF
YCR106W External link sc SF
Gene name: RDS1  sc PF
YHR056C External link sc SF
Gene name: RSC30  sc PF
YML076C External link sc SF
Gene name: WAR1  sc PF No hits
YOR337W External link sc SF
Gene name: TEA1  sc PF
YOR380W External link sc SF
Gene name: RDR1  sc PF
YJL103C External link sc SF
Gene name: YJL103C  sc PF
YOR363C External link sc SF
Gene name: PIP2  sc PF
YDR421W External link sc SF
Gene name: ARO80  sc PF
YMR019W External link sc SF
Gene name: STB4  sc PF
YLR278C External link sc SF
Gene name: YLR278C  sc PF
YDR034C External link sc SF
Gene name: LYS14  sc PF
YER184C External link sc SF
Gene name: YER184C  sc PF
YOL089C External link sc SF
Gene name: HAL9  sc PF
YLR098C External link sc SF
Gene name: CHA4  sc PF
YKL015W External link sc SF
Gene name: PUT3  sc PF
YKL222C External link sc SF
Gene name: YKL222C  sc PF
YBR240C External link sc SF
Gene name: THI2  sc PF
YAL051W External link sc SF
Gene name: OAF1  sc PF
YBR297W External link sc SF
Gene name: MAL33  sc PF
YLR451W External link sc SF
Gene name: LEU3  sc PF
YDR520C External link sc SF
Gene name: YDR520C  sc PF
YMR168C External link sc SF
Gene name: CEP3  sc PF
YIL130W External link sc SF
Gene name: YIL130W  sc PF