DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Phytophthora sojae 1.0
Taxonomy: Eukaryota; stramenopiles; Oomycetes; Pythiales; Pythiaceae; Phytophthora
source (downloaded: 2005-09-08)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
129252 External link sj SF
  sj PF
139053 External link sj SF
  sj PF
137571 External link sj SF
  sj PF
127935 External link sj SF
  sj PF
134456 External link sj SF
  sj PF
129492 External link sj SF
  sj PF
130592 External link sj SF
  sj PF
127527 External link sj SF
  sj PF
134729 External link sj SF
  sj PF
127993 External link sj SF
  sj PF
128916 External link sj SF
  sj PF
136109 External link sj SF
  sj PF
134727 External link sj SF
  sj PF
138577 External link sj SF
  sj PF
128917 External link sj SF
  sj PF
128918 External link sj SF
  sj PF
134728 External link sj SF
  sj PF
137937 External link sj SF
  sj PF
128921 External link sj SF
  sj PF
144145 External link sj SF
  sj PF
128920 External link sj SF
  sj PF
115789 External link sj SF
  sj PF
110937 External link sj SF
  sj PF
137938 External link sj SF
  sj PF
128311 External link sj SF
  sj PF No hits
141883 External link sj SF
  sj PF
128919 External link sj SF
  sj PF
136974 External link sj SF
  sj PF
128399 External link sj SF
  sj PF
128276 External link sj SF
  sj PF
143579 External link sj SF
  sj PF
136577 External link sj SF
  sj PF
131162 External link sj SF
  sj PF
140330 External link sj SF
  sj PF
118006 External link sj SF
  sj PF
137014 External link sj SF
  sj PF No hits
142457 External link sj SF
  sj PF
135247 External link sj SF
  sj PF
136488 External link sj SF
  sj PF
143534 External link sj SF
  sj PF
130797 External link sj SF
  sj PF
128347 External link sj SF
  sj PF
125263 External link sj SF
  sj PF
137135 External link sj SF
  sj PF
138371 External link sj SF
  sj PF
127078 External link sj SF
  sj PF
138869 External link sj SF
  sj PF
128029 External link sj SF
  sj PF
143581 External link sj SF
  sj PF
130874 External link sj SF
  sj PF