DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Salmonella typhimurium LT2
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella
source (downloaded: 2008-05-03)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|16765288|ref|NP_460903.1| External link su SF
Gene name: sdiA  su PF
gi|16763853|ref|NP_459468.1| External link su SF
Gene name: hha  su PF
gi|39546317|ref|NP_460424.2| External link su SF
Gene name: ydgT  su PF
gi|16765267|ref|NP_460882.1| External link su SF
Gene name: flhD  su PF
gi|16767694|ref|NP_463309.1| External link su SF
  su PF
gi|16765593|ref|NP_461208.1| External link su SF
Gene name: ada  su PF
gi|16766043|ref|NP_461658.1| External link su SF
  su PF
gi|16764187|ref|NP_459802.1| External link su SF
Gene name: ybiI  su PF
gi|16765688|ref|NP_461303.1| External link su SF
  su PF
gi|16766165|ref|NP_461780.1| External link su SF
Gene name: fhlA  su PF
gi|16766145|ref|NP_461760.1| External link su SF
Gene name: ygaA  su PF
gi|16765026|ref|NP_460641.1| External link su SF
Gene name: tyrR  su PF
gi|16766947|ref|NP_462562.1| External link su SF
Gene name: xylR  su PF
gi|16764484|ref|NP_460099.1| External link su SF
  su PF
gi|16765892|ref|NP_461507.1| External link su SF
Gene name: yfhH  su PF
gi|16765229|ref|NP_460844.1| External link su SF
Gene name: yebK  su PF
gi|16767663|ref|NP_463278.1| External link su SF
  su PF
gi|16764052|ref|NP_459667.1| External link su SF
Gene name: nagC  su PF
gi|16765034|ref|NP_460649.1| External link su SF
Gene name: pspF  su PF
gi|16763747|ref|NP_459362.1| External link su SF
Gene name: prpR  su PF
gi|16767428|ref|NP_463043.1| External link su SF
Gene name: hydG  su PF
gi|16765722|ref|NP_461337.1| External link su SF
Gene name: pgtA  su PF
gi|16767270|ref|NP_462885.1| External link su SF
Gene name: glnG  su PF
gi|16765108|ref|NP_460723.1| External link su SF
Gene name: narL  su PF
gi|16767074|ref|NP_462689.1| External link su SF
Gene name: uhpA  su PF
gi|16766892|ref|NP_462507.1| External link su SF
Gene name: yhjB  su PF
gi|16764741|ref|NP_460356.1| External link su SF
Gene name: ssrB  su PF
gi|16766096|ref|NP_461711.1| External link su SF
Gene name: tctD  su PF
gi|16765597|ref|NP_461212.1| External link su SF
Gene name: rcsB  su PF
gi|16765285|ref|NP_460900.1| External link su SF
Gene name: uvrY  su PF
gi|16765574|ref|NP_461189.1| External link su SF
Gene name: narP  su PF
gi|16763929|ref|NP_459544.1| External link su SF
Gene name: fimZ  su PF
gi|16765461|ref|NP_461076.1| External link su SF
Gene name: baeR  su PF
gi|16764586|ref|NP_460201.1| External link su SF
Gene name: phoP  su PF
gi|16767109|ref|NP_462724.1| External link su SF
Gene name: torR  su PF
gi|16767542|ref|NP_463157.1| External link su SF
Gene name: basR  su PF
gi|16766477|ref|NP_462092.1| External link su SF
Gene name: ygiX  su PF
gi|16765488|ref|NP_461103.1| External link su SF
Gene name: yehT  su PF
gi|16767839|ref|NP_463454.1| External link su SF
Gene name: arcA  su PF
gi|161353605|ref|NP_460069.2| External link su SF
  su PF
gi|16763777|ref|NP_459392.1| External link su SF
Gene name: phoB  su PF
gi|16764072|ref|NP_459687.1| External link su SF
Gene name: kdpE  su PF
gi|16766790|ref|NP_462405.1| External link su SF
Gene name: ompR  su PF
gi|39546316|ref|NP_460352.2| External link su SF
Gene name: ttrR  su PF
gi|16764820|ref|NP_460435.1| External link su SF
Gene name: rstA  su PF
gi|16767325|ref|NP_462940.1| External link su SF
Gene name: cpxR  su PF
gi|16767829|ref|NP_463444.1| External link su SF
Gene name: creB  su PF
gi|16763494|ref|NP_459109.1| External link su SF
Gene name: araC  su PF
gi|16767314|ref|NP_462929.1| External link su SF
Gene name: rhaS  su PF
gi|16766963|ref|NP_462578.1| External link su SF
  su PF