DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Thalassiosira pseudonana
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
source (downloaded: 2005-09-08)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
106764 External link tl SF
  tl PF
107119 External link tl SF
  tl PF
146220 External link tl SF
  tl PF
154819 External link tl SF
  tl PF
107118 External link tl SF
  tl PF
154649 External link tl SF
  tl PF
107109 External link tl SF
  tl PF
120894 External link tl SF
  tl PF
109696 External link tl SF
  tl PF
108220 External link tl SF
  tl PF
110483 External link tl SF
  tl PF
97792 External link tl SF
  tl PF
103483 External link tl SF
  tl PF
145510 External link tl SF
  tl PF
155252 External link tl SF
  tl PF
127924 External link tl SF
  tl PF No hits
101330 External link tl SF
  tl PF
126075 External link tl SF
  tl PF
126402 External link tl SF
  tl PF
105848 External link tl SF
  tl PF No hits
98400 External link tl SF
  tl PF
98051 External link tl SF
  tl PF
126097 External link tl SF
  tl PF
140654 External link tl SF
  tl PF
100417 External link tl SF
  tl PF
105192 External link tl SF
  tl PF
145275 External link tl SF
  tl PF
119856 External link tl SF
  tl PF No hits
139021 External link tl SF
  tl PF
117938 External link tl SF
  tl PF No hits
125005 External link tl SF
  tl PF
104443 External link tl SF
  tl PF
116713 External link tl SF
  tl PF
155778 External link tl SF
  tl PF
102850 External link tl SF
  tl PF
158167 External link tl SF
  tl PF
158706 External link tl SF
  tl PF No hits
102908 External link tl SF
  tl PF
121062 External link tl SF
  tl PF
113860 External link tl SF
  tl PF
162725 External link tl SF
  tl PF
101051 External link tl SF
  tl PF
122355 External link tl SF
  tl PF
140159 External link tl SF
  tl PF
99815 External link tl SF
  tl PF
143009 External link tl SF
  tl PF
102567 External link tl SF
  tl PF
131868 External link tl SF
  tl PF
142914 External link tl SF
  tl PF No hits
112869 External link tl SF
  tl PF