DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Tetraodon nigroviridis 49_1k (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Tetraodon
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
GSTENP00008887001 External link tn SF
  tn PF
GSTENP00023081001 External link tn SF
  tn PF
GSTENP00028826001 External link tn SF
  tn PF
GSTENP00029098001 External link tn SF
  tn PF
GSTENP00029100001 External link tn SF
  tn PF
GSTENP00029099001 External link tn SF
  tn PF
GSTENP00004768001 External link tn SF
  tn PF
GSTENP00023130001 External link tn SF
  tn PF
GSTENP00017165001 External link tn SF
  tn PF
GSTENP00005190001 External link tn SF
  tn PF
GSTENP00024419001 External link tn SF
  tn PF
GSTENP00004570001 External link tn SF
  tn PF
GSTENP00031654001 External link tn SF
  tn PF
GSTENP00029837001 External link tn SF
  tn PF
GSTENP00003481001 External link tn SF
  tn PF
GSTENP00018356001 External link tn SF
  tn PF
GSTENP00028216001 External link tn SF
  tn PF
GSTENP00000565001 External link tn SF
  tn PF
GSTENP00015507001 External link tn SF
  tn PF
GSTENP00006125001 External link tn SF
  tn PF
GSTENP00034013001 External link tn SF
  tn PF
GSTENP00027871001 External link tn SF
  tn PF
GSTENP00014042001 External link tn SF
  tn PF
GSTENP00027873001 External link tn SF
  tn PF
GSTENP00018725001 External link tn SF
  tn PF
GSTENP00026318001 External link tn SF
  tn PF
GSTENP00026317001 External link tn SF
  tn PF
GSTENP00013510001 External link tn SF
  tn PF
GSTENP00011900001 External link tn SF
  tn PF
GSTENP00024248001 External link tn SF
  tn PF
GSTENP00008995001 External link tn SF
  tn PF
GSTENP00026365001 External link tn SF
  tn PF
GSTENP00012273001 External link tn SF
  tn PF
GSTENP00019087001 External link tn SF
  tn PF
GSTENP00031158001 External link tn SF
  tn PF
GSTENP00031819001 External link tn SF
  tn PF
GSTENP00004845001 External link tn SF
  tn PF
GSTENP00018106001 External link tn SF
  tn PF
GSTENP00006366001 External link tn SF
  tn PF
GSTENP00004756001 External link tn SF
  tn PF
GSTENP00016041001 External link tn SF
  tn PF
GSTENP00023133001 External link tn SF
  tn PF
GSTENP00028850001 External link tn SF
  tn PF
GSTENP00025240001 External link tn SF
  tn PF
GSTENP00019284001 External link tn SF
  tn PF
GSTENP00026892001 External link tn SF
  tn PF
GSTENP00034672001 External link tn SF
  tn PF
GSTENP00029006001 External link tn SF
  tn PF
GSTENP00020040001 External link tn SF
  tn PF
GSTENP00017360001 External link tn SF
  tn PF