DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Takifugu rubripes 49_4i (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSTRUP00000008417 External link to SF
  to PF
ENSTRUP00000003828 External link to SF
  to PF
ENSTRUP00000004208 External link to SF
  to PF
ENSTRUP00000040103 External link to SF
  to PF
ENSTRUP00000000084 External link to SF
  to PF
ENSTRUP00000000083 External link to SF
  to PF
ENSTRUP00000040043 External link to SF
  to PF
ENSTRUP00000000081 External link to SF
  to PF
ENSTRUP00000040124 External link to SF
  to PF
ENSTRUP00000047319 External link to SF
  to PF
ENSTRUP00000000082 External link to SF
  to PF
ENSTRUP00000000080 External link to SF
  to PF
ENSTRUP00000004209 External link to SF
  to PF
ENSTRUP00000019511 External link to SF
  to PF
ENSTRUP00000019508 External link to SF
  to PF
ENSTRUP00000019510 External link to SF
  to PF
ENSTRUP00000019509 External link to SF
  to PF
ENSTRUP00000019512 External link to SF
  to PF
ENSTRUP00000000947 External link to SF
  to PF
ENSTRUP00000013559 External link to SF
  to PF
ENSTRUP00000013557 External link to SF
  to PF
ENSTRUP00000013558 External link to SF
  to PF
ENSTRUP00000013560 External link to SF
  to PF
ENSTRUP00000029691 External link to SF
  to PF
ENSTRUP00000029271 External link to SF
  to PF
ENSTRUP00000047797 External link to SF
  to PF
ENSTRUP00000033700 External link to SF
  to PF
ENSTRUP00000040590 External link to SF
  to PF
ENSTRUP00000040591 External link to SF
  to PF
ENSTRUP00000040592 External link to SF
  to PF
ENSTRUP00000023439 External link to SF
  to PF
ENSTRUP00000023438 External link to SF
  to PF
ENSTRUP00000023440 External link to SF
  to PF
ENSTRUP00000001628 External link to SF
  to PF
ENSTRUP00000001627 External link to SF
  to PF
ENSTRUP00000030875 External link to SF
  to PF
ENSTRUP00000006841 External link to SF
  to PF
ENSTRUP00000030874 External link to SF
  to PF
ENSTRUP00000030276 External link to SF
  to PF
ENSTRUP00000006843 External link to SF
  to PF
ENSTRUP00000006842 External link to SF
  to PF
ENSTRUP00000006844 External link to SF
  to PF
ENSTRUP00000036926 External link to SF
  to PF
ENSTRUP00000030873 External link to SF
  to PF
ENSTRUP00000002991 External link to SF
  to PF
ENSTRUP00000002990 External link to SF
  to PF
ENSTRUP00000020674 External link to SF
  to PF
ENSTRUP00000020675 External link to SF
  to PF
ENSTRUP00000020673 External link to SF
  to PF
ENSTRUP00000020676 External link to SF
  to PF