DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Takifugu rubripes 49_4i (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSTRUP00000003828 External link tq SF
  tq PF
ENSTRUP00000008417 External link tq SF
  tq PF
ENSTRUP00000040103 External link tq SF
  tq PF
ENSTRUP00000004208 External link tq SF
  tq PF
ENSTRUP00000040124 External link tq SF
  tq PF
ENSTRUP00000040043 External link tq SF
  tq PF
ENSTRUP00000000080 External link tq SF
  tq PF
ENSTRUP00000047319 External link tq SF
  tq PF
ENSTRUP00000019511 External link tq SF
  tq PF
ENSTRUP00000000947 External link tq SF
  tq PF
ENSTRUP00000013558 External link tq SF
  tq PF
ENSTRUP00000033700 External link tq SF
  tq PF
ENSTRUP00000047797 External link tq SF
  tq PF
ENSTRUP00000029271 External link tq SF
  tq PF
ENSTRUP00000040590 External link tq SF
  tq PF
ENSTRUP00000023439 External link tq SF
  tq PF
ENSTRUP00000001628 External link tq SF
  tq PF
ENSTRUP00000030276 External link tq SF
  tq PF
ENSTRUP00000006841 External link tq SF
  tq PF
ENSTRUP00000036926 External link tq SF
  tq PF
ENSTRUP00000030873 External link tq SF
  tq PF
ENSTRUP00000002991 External link tq SF
  tq PF
ENSTRUP00000020673 External link tq SF
  tq PF
ENSTRUP00000024227 External link tq SF
  tq PF
ENSTRUP00000026330 External link tq SF
  tq PF
ENSTRUP00000021947 External link tq SF
  tq PF
ENSTRUP00000032130 External link tq SF
  tq PF
ENSTRUP00000016262 External link tq SF
  tq PF
ENSTRUP00000012158 External link tq SF
  tq PF
ENSTRUP00000043683 External link tq SF
  tq PF
ENSTRUP00000011688 External link tq SF
  tq PF
ENSTRUP00000016692 External link tq SF
  tq PF
ENSTRUP00000018575 External link tq SF
  tq PF
ENSTRUP00000021000 External link tq SF
  tq PF
ENSTRUP00000004516 External link tq SF
  tq PF
ENSTRUP00000033794 External link tq SF
  tq PF
ENSTRUP00000024789 External link tq SF
  tq PF
ENSTRUP00000045824 External link tq SF
  tq PF
ENSTRUP00000034648 External link tq SF
  tq PF
ENSTRUP00000038361 External link tq SF
  tq PF
ENSTRUP00000043153 External link tq SF
  tq PF
ENSTRUP00000022733 External link tq SF
  tq PF
ENSTRUP00000042740 External link tq SF
  tq PF
ENSTRUP00000047052 External link tq SF
  tq PF
ENSTRUP00000019015 External link tq SF
  tq PF
ENSTRUP00000003187 External link tq SF
  tq PF
ENSTRUP00000026186 External link tq SF
  tq PF
ENSTRUP00000045137 External link tq SF
  tq PF
ENSTRUP00000018073 External link tq SF
  tq PF
ENSTRUP00000037230 External link tq SF
  tq PF