DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Verticillium dahliae VdLs.17
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetes incertae sedis; Phyllachorales; mitosporic Phyllachorales; Verticillium
source (downloaded: 2008-08-27)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
VDAG_01608 vd SF
  vd PF
VDAG_07460 vd SF
  vd PF
VDAG_06319 vd SF
  vd PF
VDAG_00352 vd SF
  vd PF
VDAG_09242 vd SF
  vd PF No hits
VDAG_09011 vd SF
  vd PF
VDAG_01803 vd SF
  vd PF
VDAG_01163 vd SF
  vd PF
VDAG_01478 vd SF
  vd PF
VDAG_09144 vd SF
  vd PF
VDAG_08992 vd SF
  vd PF
VDAG_07737 vd SF
  vd PF
VDAG_01318 vd SF
  vd PF
VDAG_05903 vd SF
  vd PF
VDAG_02205 vd SF
  vd PF
VDAG_10120 vd SF
  vd PF
VDAG_08406 vd SF
  vd PF
VDAG_02198 vd SF
  vd PF
VDAG_07426 vd SF
  vd PF
VDAG_05809 vd SF
  vd PF
VDAG_02539 vd SF
  vd PF
VDAG_04548 vd SF
  vd PF
VDAG_01690 vd SF
  vd PF
VDAG_02146 vd SF
  vd PF
VDAG_07545 vd SF
  vd PF
VDAG_03306 vd SF
  vd PF
VDAG_09607 vd SF
  vd PF
VDAG_06781 vd SF
  vd PF
VDAG_01746 vd SF
  vd PF
VDAG_01581 vd SF
  vd PF
VDAG_01994 vd SF
  vd PF
VDAG_04640 vd SF
  vd PF
VDAG_03469 vd SF
  vd PF
VDAG_01189 vd SF
  vd PF
VDAG_04843 vd SF
  vd PF
VDAG_03900 vd SF
  vd PF
VDAG_05862 vd SF
  vd PF
VDAG_05636 vd SF
  vd PF
VDAG_05079 vd SF
  vd PF
VDAG_03199 vd SF
  vd PF
VDAG_00301 vd SF
  vd PF
VDAG_07925 vd SF
  vd PF
VDAG_03648 vd SF
  vd PF
VDAG_03761 vd SF
  vd PF
VDAG_05342 vd SF
  vd PF
VDAG_07704 vd SF
  vd PF
VDAG_05349 vd SF
  vd PF
VDAG_09277 vd SF
  vd PF
VDAG_08115 vd SF
  vd PF
VDAG_04995 vd SF
  vd PF