DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Verticillium albo-atrum VaMs.102
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetes incertae sedis; Phyllachorales; mitosporic Phyllachorales; Verticillium
source (downloaded: 2008-08-27)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
VDBG_08112 ve SF
  ve PF
VDBG_09306 ve SF
  ve PF
VDBG_08656 ve SF
  ve PF
VDBG_00739 ve SF
  ve PF
VDBG_00527 ve SF
  ve PF
VDBG_01745 ve SF
  ve PF
VDBG_07521 ve SF
  ve PF No hits
VDBG_03934 ve SF
  ve PF
VDBG_01698 ve SF
  ve PF
VDBG_03531 ve SF
  ve PF
VDBG_06515 ve SF
  ve PF
VDBG_07858 ve SF
  ve PF
VDBG_10046 ve SF
  ve PF No hits
VDBG_08099 ve SF
  ve PF
VDBG_00686 ve SF
  ve PF
VDBG_05433 ve SF
  ve PF
VDBG_01336 ve SF
  ve PF
VDBG_08557 ve SF
  ve PF
VDBG_08781 ve SF
  ve PF
VDBG_06838 ve SF
  ve PF
VDBG_09240 ve SF
  ve PF
VDBG_00821 ve SF
  ve PF
VDBG_06597 ve SF
  ve PF
VDBG_08750 ve SF
  ve PF
VDBG_06776 ve SF
  ve PF
VDBG_05795 ve SF
  ve PF
VDBG_04603 ve SF
  ve PF
VDBG_03200 ve SF
  ve PF
VDBG_02321 ve SF
  ve PF
VDBG_02943 ve SF
  ve PF
VDBG_02139 ve SF
  ve PF
VDBG_04521 ve SF
  ve PF
VDBG_01161 ve SF
  ve PF
VDBG_06797 ve SF
  ve PF
VDBG_02829 ve SF
  ve PF
VDBG_08151 ve SF
  ve PF
VDBG_08608 ve SF
  ve PF
VDBG_01258 ve SF
  ve PF
VDBG_02399 ve SF
  ve PF
VDBG_03963 ve SF
  ve PF
VDBG_01253 ve SF
  ve PF
VDBG_02400 ve SF
  ve PF
VDBG_04567 ve SF
  ve PF
VDBG_01044 ve SF
  ve PF
VDBG_06331 ve SF
  ve PF
VDBG_05154 ve SF
  ve PF
VDBG_07138 ve SF
  ve PF
VDBG_07082 ve SF
  ve PF
VDBG_06454 ve SF
  ve PF
VDBG_07207 ve SF
  ve PF