DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Volvox carteri f. nagariensis
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
source (downloaded: 2007-07-07)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Volca1|108387|estExt_fgenesh4_pg.C_1110008 External link vo SF
  vo PF
jgi|Volca1|88962|fgenesh4_pg.C_scaffold_10000246 External link vo SF
  vo PF No hits
jgi|Volca1|91977|fgenesh4_pg.C_scaffold_23000175 External link vo SF
  vo PF No hits
jgi|Volca1|91022|fgenesh4_pg.C_scaffold_19000108 External link vo SF
  vo PF No hits
jgi|Volca1|91035|fgenesh4_pg.C_scaffold_19000121 External link vo SF
  vo PF No hits
jgi|Volca1|121714|estExt_fgenesh5_synt.C_920011 External link vo SF
  vo PF
jgi|Volca1|97082|fgenesh4_pg.C_scaffold_57000094 External link vo SF
  vo PF
jgi|Volca1|97081|fgenesh4_pg.C_scaffold_57000093 External link vo SF
  vo PF
jgi|Volca1|91513|fgenesh4_pg.C_scaffold_21000122 External link vo SF
  vo PF
jgi|Volca1|99167|fgenesh4_pg.C_scaffold_83000014 External link vo SF
  vo PF
jgi|Volca1|119580|fgenesh5_synt.68__5 External link vo SF
  vo PF
jgi|Volca1|94813|fgenesh4_pg.C_scaffold_39000154 External link vo SF
  vo PF
jgi|Volca1|86378|fgenesh4_pg.C_scaffold_1000626 External link vo SF
  vo PF
jgi|Volca1|117837|fgenesh5_synt.23__35 External link vo SF
  vo PF
jgi|Volca1|85916|fgenesh4_pg.C_scaffold_1000164 External link vo SF
  vo PF
jgi|Volca1|106254|estExt_fgenesh4_pg.C_400112 External link vo SF
  vo PF
jgi|Volca1|99159|fgenesh4_pg.C_scaffold_83000006 External link vo SF
  vo PF
jgi|Volca1|79631|estExt_Genewise1Plus.C_60074 External link vo SF
  vo PF No hits
jgi|Volca1|79791|estExt_Genewise1Plus.C_70072 External link vo SF
  vo PF
jgi|Volca1|118317|fgenesh5_synt.35__12 External link vo SF
  vo PF
jgi|Volca1|68961|e_gw1.84.50.1 External link vo SF
  vo PF
jgi|Volca1|77804|estExt_Genewise1.C_850056 External link vo SF
  vo PF
jgi|Volca1|90731|fgenesh4_pg.C_scaffold_18000062 External link vo SF
  vo PF
jgi|Volca1|90606|fgenesh4_pg.C_scaffold_17000167 External link vo SF
  vo PF
jgi|Volca1|86539|fgenesh4_pg.C_scaffold_3000035 External link vo SF
  vo PF No hits
jgi|Volca1|102996|estExt_fgenesh4_pg.C_30147 External link vo SF
  vo PF
jgi|Volca1|60323|e_gw1.18.245.1 External link vo SF
  vo PF
jgi|Volca1|36017|gw1.73.20.1 External link vo SF
  vo PF
jgi|Volca1|87913|fgenesh4_pg.C_scaffold_7000069 External link vo SF
  vo PF
jgi|Volca1|49174|gw1.20.234.1 External link vo SF
  vo PF
jgi|Volca1|91440|fgenesh4_pg.C_scaffold_21000049 External link vo SF
  vo PF
jgi|Volca1|95505|fgenesh4_pg.C_scaffold_44000085 External link vo SF
  vo PF
jgi|Volca1|92649|fgenesh4_pg.C_scaffold_27000072 External link vo SF
  vo PF
jgi|Volca1|92642|fgenesh4_pg.C_scaffold_27000065 External link vo SF
  vo PF
jgi|Volca1|68188|e_gw1.73.76.1 External link vo SF
  vo PF
jgi|Volca1|93193|fgenesh4_pg.C_scaffold_30000063 External link vo SF
  vo PF
jgi|Volca1|93762|fgenesh4_pg.C_scaffold_33000123 External link vo SF
  vo PF
jgi|Volca1|97414|fgenesh4_pg.C_scaffold_60000103 External link vo SF
  vo PF
jgi|Volca1|94225|fgenesh4_pg.C_scaffold_36000091 External link vo SF
  vo PF
jgi|Volca1|93984|fgenesh4_pg.C_scaffold_35000014 External link vo SF
  vo PF
jgi|Volca1|63412|e_gw1.35.74.1 External link vo SF
  vo PF
jgi|Volca1|36243|gw1.35.75.1 External link vo SF
  vo PF
jgi|Volca1|104784|estExt_fgenesh4_pg.C_190128 External link vo SF
  vo PF
jgi|Volca1|89954|fgenesh4_pg.C_scaffold_15000001 External link vo SF
  vo PF
jgi|Volca1|105483|estExt_fgenesh4_pg.C_290069 External link vo SF
  vo PF
jgi|Volca1|105771|estExt_fgenesh4_pg.C_330097 External link vo SF
  vo PF
jgi|Volca1|92648|fgenesh4_pg.C_scaffold_27000071 External link vo SF
  vo PF
jgi|Volca1|120236|estExt_fgenesh5_synt.C_10275 External link vo SF
  vo PF
jgi|Volca1|90047|fgenesh4_pg.C_scaffold_15000094 External link vo SF
  vo PF
jgi|Volca1|120238|estExt_fgenesh5_synt.C_10279 External link vo SF
  vo PF