DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Cochliobolus heterostrophus
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporaceae; Cochliobolus
source (downloaded: 2008-07-02)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|CocheC5_1|44676|gw1.14.354.1 External link wc SF
  wc PF
jgi|CocheC5_1|41664|gw1.3.416.1 External link wc SF
  wc PF
jgi|CocheC5_1|29347|estExt_fgenesh1_pg.C_70010 External link wc SF
  wc PF
jgi|CocheC5_1|109473|estExt_Genewise1Plus.C_150287 External link wc SF
  wc PF
jgi|CocheC5_1|27123|estExt_fgenesh1_pg.C_10636 External link wc SF
  wc PF No hits
jgi|CocheC5_1|26253|estExt_fgenesh1_kg.C_210026 External link wc SF
  wc PF
jgi|CocheC5_1|115601|estExt_fgenesh1_pm.C_10224 External link wc SF
  wc PF
jgi|CocheC5_1|105374|estExt_Genewise1Plus.C_90097 External link wc SF
  wc PF
jgi|CocheC5_1|102757|estExt_Genewise1Plus.C_60022 External link wc SF
  wc PF No hits
jgi|CocheC5_1|26662|estExt_fgenesh1_pg.C_10092 External link wc SF
  wc PF
jgi|CocheC5_1|110178|estExt_Genewise1Plus.C_160442 External link wc SF
  wc PF
jgi|CocheC5_1|90366|estExt_Genewise1.C_140356 External link wc SF
  wc PF
jgi|CocheC5_1|21458|fgenesh1_pg.C_scaffold_14000139 External link wc SF
  wc PF
jgi|CocheC5_1|27274|estExt_fgenesh1_pg.C_20062 External link wc SF
  wc PF
jgi|CocheC5_1|20075|fgenesh1_pg.C_scaffold_9000295 External link wc SF
  wc PF
jgi|CocheC5_1|109117|estExt_Genewise1Plus.C_140579 External link wc SF
  wc PF
jgi|CocheC5_1|26957|estExt_fgenesh1_pg.C_10450 External link wc SF
  wc PF
jgi|CocheC5_1|26655|estExt_fgenesh1_pg.C_10083 External link wc SF
  wc PF
jgi|CocheC5_1|34372|gw1.2.32.1 External link wc SF
  wc PF
jgi|CocheC5_1|107774|estExt_Genewise1Plus.C_120314 External link wc SF
  wc PF
jgi|CocheC5_1|18624|fgenesh1_pg.C_scaffold_6000005 External link wc SF
  wc PF
jgi|CocheC5_1|78893|estExt_Genewise1.C_10564 External link wc SF
  wc PF
jgi|CocheC5_1|61830|e_gw1.4.588.1 External link wc SF
  wc PF
jgi|CocheC5_1|78660|estExt_Genewise1.C_10324 External link wc SF
  wc PF
jgi|CocheC5_1|31261|estExt_fgenesh1_pg.C_140029 External link wc SF
  wc PF
jgi|CocheC5_1|29904|estExt_fgenesh1_pg.C_80256 External link wc SF
  wc PF
jgi|CocheC5_1|105137|estExt_Genewise1Plus.C_80653 External link wc SF
  wc PF
jgi|CocheC5_1|21177|fgenesh1_pg.C_scaffold_13000086 External link wc SF
  wc PF
jgi|CocheC5_1|33317|estExt_fgenesh1_pg.C_270028 External link wc SF
  wc PF No hits
jgi|CocheC5_1|94030|estExt_Genewise1.C_230115 External link wc SF
  wc PF
jgi|CocheC5_1|103572|estExt_Genewise1Plus.C_60913 External link wc SF
  wc PF
jgi|CocheC5_1|79741|estExt_Genewise1.C_11541 External link wc SF
  wc PF
jgi|CocheC5_1|64594|e_gw1.6.172.1 External link wc SF
  wc PF
jgi|CocheC5_1|28390|estExt_fgenesh1_pg.C_40211 External link wc SF
  wc PF
jgi|CocheC5_1|27046|estExt_fgenesh1_pg.C_10554 External link wc SF
  wc PF
jgi|CocheC5_1|100492|estExt_Genewise1Plus.C_30684 External link wc SF
  wc PF
jgi|CocheC5_1|105206|estExt_Genewise1Plus.C_80759 External link wc SF
  wc PF
jgi|CocheC5_1|13553|fgenesh1_pm.C_scaffold_11000018 External link wc SF
  wc PF
jgi|CocheC5_1|97784|estExt_Genewise1Plus.C_11175 External link wc SF
  wc PF
jgi|CocheC5_1|77923|e_gw1.36.91.1 External link wc SF
  wc PF
jgi|CocheC5_1|29892|estExt_fgenesh1_pg.C_80238 External link wc SF
  wc PF
jgi|CocheC5_1|28410|estExt_fgenesh1_pg.C_40234 External link wc SF
  wc PF
jgi|CocheC5_1|87527|estExt_Genewise1.C_90801 External link wc SF
  wc PF
jgi|CocheC5_1|106398|estExt_Genewise1Plus.C_100437 External link wc SF
  wc PF
jgi|CocheC5_1|106760|estExt_Genewise1Plus.C_100833 External link wc SF
  wc PF
jgi|CocheC5_1|86035|estExt_Genewise1.C_70920 External link wc SF
  wc PF
jgi|CocheC5_1|114926|estExt_Genewise1Plus.C_340098 External link wc SF
  wc PF
jgi|CocheC5_1|104548|estExt_Genewise1Plus.C_71000 External link wc SF
  wc PF
jgi|CocheC5_1|72341|e_gw1.17.54.1 External link wc SF
  wc PF
jgi|CocheC5_1|33478|estExt_fgenesh1_pg.C_290081 External link wc SF
  wc PF