DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Trichoderma atroviride
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; mitosporic Hypocreaceae; Trichoderma
source (downloaded: 2008-07-02)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Triat1|27967|gw1.11.1270.1 External link wt SF
  wt PF
jgi|Triat1|8455|gw1.21.47.1 External link wt SF
  wt PF
jgi|Triat1|8464|gw1.2.463.1 External link wt SF
  wt PF
jgi|Triat1|8462|gw1.3.452.1 External link wt SF
  wt PF
jgi|Triat1|150868|estExt_Genewise1Plus.C_31593 External link wt SF
  wt PF
jgi|Triat1|131396|estExt_fgenesh1_pg.C_30405 External link wt SF
  wt PF
jgi|Triat1|93987|fgenesh1_pg.C_scaffold_18000134 External link wt SF
  wt PF
jgi|Triat1|33869|e_gw1.2.197.1 External link wt SF
  wt PF
jgi|Triat1|35267|e_gw1.2.273.1 External link wt SF
  wt PF
jgi|Triat1|77763|fgenesh1_pm.C_scaffold_1000348 External link wt SF
  wt PF No hits
jgi|Triat1|34026|e_gw1.2.648.1 External link wt SF
  wt PF
jgi|Triat1|136064|estExt_Genewise1.C_13895 External link wt SF
  wt PF
jgi|Triat1|53228|e_gw1.17.53.1 External link wt SF
  wt PF
jgi|Triat1|30069|e_gw1.1.3293.1 External link wt SF
  wt PF
jgi|Triat1|126883|estExt_fgenesh1_pm.C_10126 External link wt SF
  wt PF
jgi|Triat1|35225|e_gw1.2.808.1 External link wt SF
  wt PF
jgi|Triat1|135028|estExt_Genewise1.C_11876 External link wt SF
  wt PF
jgi|Triat1|30559|e_gw1.1.3429.1 External link wt SF
  wt PF
jgi|Triat1|131799|estExt_fgenesh1_pg.C_40418 External link wt SF
  wt PF
jgi|Triat1|91068|fgenesh1_pg.C_scaffold_9000414 External link wt SF
  wt PF
jgi|Triat1|145197|estExt_Genewise1.C_160278 External link wt SF
  wt PF
jgi|Triat1|9618|gw1.1.917.1 External link wt SF
  wt PF
jgi|Triat1|133633|estExt_fgenesh1_pg.C_130272 External link wt SF
  wt PF
jgi|Triat1|45437|e_gw1.8.677.1 External link wt SF
  wt PF
jgi|Triat1|139614|estExt_Genewise1.C_42062 External link wt SF
  wt PF
jgi|Triat1|93911|fgenesh1_pg.C_scaffold_18000058 External link wt SF
  wt PF
jgi|Triat1|46834|e_gw1.10.146.1 External link wt SF
  wt PF
jgi|Triat1|83642|fgenesh1_pm.C_scaffold_17000117 External link wt SF
  wt PF
jgi|Triat1|138069|estExt_Genewise1.C_31093 External link wt SF
  wt PF
jgi|Triat1|92249|fgenesh1_pg.C_scaffold_12000237 External link wt SF
  wt PF No hits
jgi|Triat1|81058|fgenesh1_pm.C_scaffold_8000037 External link wt SF
  wt PF
jgi|Triat1|35132|e_gw1.2.769.1 External link wt SF
  wt PF
jgi|Triat1|2693|gw1.9.105.1 External link wt SF
  wt PF
jgi|Triat1|33897|e_gw1.2.683.1 External link wt SF
  wt PF
jgi|Triat1|53848|e_gw1.18.382.1 External link wt SF
  wt PF
jgi|Triat1|55038|e_gw1.21.59.1 External link wt SF
  wt PF
jgi|Triat1|86615|fgenesh1_pg.C_scaffold_2001008 External link wt SF
  wt PF
jgi|Triat1|135729|estExt_Genewise1.C_13278 External link wt SF
  wt PF
jgi|Triat1|13574|gw1.8.674.1 External link wt SF
  wt PF
jgi|Triat1|86893|fgenesh1_pg.C_scaffold_3000150 External link wt SF
  wt PF
jgi|Triat1|94371|fgenesh1_pg.C_scaffold_23000003 External link wt SF
  wt PF
jgi|Triat1|156550|estExt_Genewise1Plus.C_120938 External link wt SF
  wt PF
jgi|Triat1|43281|e_gw1.7.1146.1 External link wt SF
  wt PF
jgi|Triat1|33382|e_gw1.2.2229.1 External link wt SF
  wt PF
jgi|Triat1|37902|e_gw1.4.289.1 External link wt SF
  wt PF
jgi|Triat1|32242|e_gw1.1.3251.1 External link wt SF
  wt PF
jgi|Triat1|90461|fgenesh1_pg.C_scaffold_8000328 External link wt SF
  wt PF
jgi|Triat1|141953|estExt_Genewise1.C_81234 External link wt SF
  wt PF
jgi|Triat1|30284|e_gw1.1.1906.1 External link wt SF
  wt PF
jgi|Triat1|32748|e_gw1.2.97.1 External link wt SF
  wt PF