DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Sorex araneus 49_1c (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Insectivora; Soricidae; Soricinae; Sorex
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSSARP00000002046 External link xb SF
  xb PF No hits
ENSSARP00000000218 External link xb SF
  xb PF
ENSSARP00000003687 External link xb SF
  xb PF
ENSSARP00000003044 External link xb SF
  xb PF
ENSSARP00000001076 External link xb SF
  xb PF
ENSSARP00000011068 External link xb SF
  xb PF
ENSSARP00000006171 External link xb SF
  xb PF
ENSSARP00000009998 External link xb SF
  xb PF
ENSSARP00000009515 External link xb SF
  xb PF
ENSSARP00000002698 External link xb SF
  xb PF
ENSSARP00000012957 External link xb SF
  xb PF
ENSSARP00000009438 External link xb SF
  xb PF
ENSSARP00000007771 External link xb SF
  xb PF
ENSSARP00000005879 External link xb SF
  xb PF
ENSSARP00000001246 External link xb SF
  xb PF
ENSSARP00000004057 External link xb SF
  xb PF
ENSSARP00000009758 External link xb SF
  xb PF
ENSSARP00000004949 External link xb SF
  xb PF
ENSSARP00000002415 External link xb SF
  xb PF
ENSSARP00000003634 External link xb SF
  xb PF
ENSSARP00000004088 External link xb SF
  xb PF
ENSSARP00000009356 External link xb SF
  xb PF
ENSSARP00000012276 External link xb SF
  xb PF
ENSSARP00000001343 External link xb SF
  xb PF
ENSSARP00000007270 External link xb SF
  xb PF
ENSSARP00000012244 External link xb SF
  xb PF
ENSSARP00000006852 External link xb SF
  xb PF
ENSSARP00000001043 External link xb SF
  xb PF
ENSSARP00000002854 External link xb SF
  xb PF
ENSSARP00000008858 External link xb SF
  xb PF
ENSSARP00000010685 External link xb SF
  xb PF
ENSSARP00000005420 External link xb SF
  xb PF
ENSSARP00000004001 External link xb SF
  xb PF
ENSSARP00000008808 External link xb SF
  xb PF
ENSSARP00000006062 External link xb SF
  xb PF
ENSSARP00000000561 External link xb SF
  xb PF
ENSSARP00000012485 External link xb SF
  xb PF
ENSSARP00000009573 External link xb SF
  xb PF
ENSSARP00000012833 External link xb SF
  xb PF
ENSSARP00000001856 External link xb SF
  xb PF
ENSSARP00000003134 External link xb SF
  xb PF
ENSSARP00000008941 External link xb SF
  xb PF
ENSSARP00000012421 External link xb SF
  xb PF
ENSSARP00000006957 External link xb SF
  xb PF
ENSSARP00000009221 External link xb SF
  xb PF
ENSSARP00000009412 External link xb SF
  xb PF
ENSSARP00000003832 External link xb SF
  xb PF
ENSSARP00000006877 External link xb SF
  xb PF
ENSSARP00000007055 External link xb SF
  xb PF
ENSSARP00000005880 External link xb SF
  xb PF