DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Toxoplasma gondii RH
Taxonomy: Eukaryota; Alveolata; Apicomplexa; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma
source (downloaded: 2007-10-02)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


Details Genome DB Domain architecture
65.m01182 External link xg SF
  xg PF
339.m00001 External link xg SF
  xg PF
20.m03973 External link xg SF
  xg PF
583.m05434 External link xg SF
  xg PF
76.m00006 External link xg SF
  xg PF
20.m03700 External link xg SF
  xg PF No hits
641.m01588 External link xg SF
  xg PF
65.m00003 External link xg SF
  xg PF
8.m00188 External link xg SF
  xg PF
63.m00265 External link xg SF
  xg PF
541.m01211 External link xg SF
  xg PF
55.m04988 External link xg SF
  xg PF
31.m00899 External link xg SF
  xg PF
20.m03793 External link xg SF
  xg PF
162.m00513 External link xg SF
  xg PF
645.m00549 External link xg SF No hits
  xg PF
541.m01162 External link xg SF No hits
  xg PF
80.m02313 External link xg SF No hits
  xg PF
49.m03440 External link xg SF No hits
  xg PF
583.m05543 External link xg SF No hits
  xg PF
41.m01325 External link xg SF No hits
  xg PF
641.m02536 External link xg SF No hits
  xg PF
49.m03198 External link xg SF No hits
  xg PF