DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Xenopus tropicalis 49_41i (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSXETP00000002324 External link xk SF
  xk PF
ENSXETP00000057127 External link xk SF
  xk PF
ENSXETP00000012020 External link xk SF
  xk PF
ENSXETP00000033420 External link xk SF
  xk PF
ENSXETP00000006216 External link xk SF
  xk PF
ENSXETP00000018988 External link xk SF
  xk PF
ENSXETP00000044566 External link xk SF
  xk PF
ENSXETP00000035448 External link xk SF
  xk PF
ENSXETP00000031491 External link xk SF
  xk PF
ENSXETP00000026446 External link xk SF
  xk PF
ENSXETP00000016225 External link xk SF
  xk PF
ENSXETP00000022709 External link xk SF
  xk PF
ENSXETP00000049701 External link xk SF
  xk PF
ENSXETP00000007871 External link xk SF
  xk PF
ENSXETP00000003515 External link xk SF
  xk PF
ENSXETP00000013974 External link xk SF
  xk PF
ENSXETP00000032804 External link xk SF
  xk PF
ENSXETP00000017064 External link xk SF
  xk PF
ENSXETP00000040400 External link xk SF
  xk PF
ENSXETP00000046519 External link xk SF
  xk PF
ENSXETP00000029118 External link xk SF
  xk PF
ENSXETP00000006533 External link xk SF
  xk PF
ENSXETP00000021944 External link xk SF
  xk PF
ENSXETP00000001647 External link xk SF
  xk PF
ENSXETP00000044889 External link xk SF
  xk PF
ENSXETP00000038344 External link xk SF
  xk PF
ENSXETP00000001419 External link xk SF
  xk PF
ENSXETP00000019633 External link xk SF
  xk PF
ENSXETP00000035623 External link xk SF
  xk PF
ENSXETP00000040139 External link xk SF
  xk PF
ENSXETP00000011150 External link xk SF
  xk PF
ENSXETP00000006823 External link xk SF
  xk PF
ENSXETP00000001472 External link xk SF
  xk PF
ENSXETP00000035260 External link xk SF
  xk PF
ENSXETP00000054187 External link xk SF
  xk PF
ENSXETP00000033104 External link xk SF
  xk PF
ENSXETP00000003968 External link xk SF
  xk PF
ENSXETP00000010442 External link xk SF
  xk PF
ENSXETP00000046366 External link xk SF
  xk PF
ENSXETP00000036929 External link xk SF
  xk PF
ENSXETP00000052764 External link xk SF
  xk PF
ENSXETP00000017869 External link xk SF
  xk PF
ENSXETP00000045241 External link xk SF
  xk PF
ENSXETP00000015821 External link xk SF
  xk PF
ENSXETP00000039111 External link xk SF
  xk PF
ENSXETP00000025024 External link xk SF
  xk PF
ENSXETP00000001266 External link xk SF
  xk PF
ENSXETP00000050646 External link xk SF
  xk PF
ENSXETP00000000645 External link xk SF
  xk PF
ENSXETP00000035778 External link xk SF
  xk PF