DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Xenopus tropicalis 49_41i (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSXETP00000002324 External link xn SF
  xn PF
ENSXETP00000057127 External link xn SF
  xn PF
ENSXETP00000057279 External link xn SF
  xn PF No hits
ENSXETP00000057281 External link xn SF
  xn PF
ENSXETP00000057282 External link xn SF
  xn PF
ENSXETP00000033420 External link xn SF
  xn PF
ENSXETP00000057284 External link xn SF
  xn PF
ENSXETP00000004858 External link xn SF
  xn PF
ENSXETP00000012020 External link xn SF
  xn PF
ENSXETP00000006216 External link xn SF
  xn PF
ENSXETP00000018988 External link xn SF
  xn PF
ENSXETP00000044566 External link xn SF
  xn PF
ENSXETP00000035448 External link xn SF
  xn PF
ENSXETP00000031491 External link xn SF
  xn PF
ENSXETP00000026446 External link xn SF
  xn PF
ENSXETP00000016225 External link xn SF
  xn PF
ENSXETP00000022709 External link xn SF
  xn PF
ENSXETP00000049701 External link xn SF
  xn PF
ENSXETP00000049703 External link xn SF
  xn PF
ENSXETP00000007863 External link xn SF
  xn PF
ENSXETP00000007871 External link xn SF
  xn PF
ENSXETP00000007868 External link xn SF
  xn PF
ENSXETP00000003356 External link xn SF
  xn PF
ENSXETP00000003354 External link xn SF
  xn PF
ENSXETP00000003515 External link xn SF
  xn PF
ENSXETP00000032806 External link xn SF
  xn PF
ENSXETP00000013974 External link xn SF
  xn PF
ENSXETP00000032804 External link xn SF
  xn PF
ENSXETP00000057598 External link xn SF
  xn PF
ENSXETP00000017064 External link xn SF
  xn PF
ENSXETP00000046519 External link xn SF
  xn PF
ENSXETP00000040400 External link xn SF
  xn PF
ENSXETP00000040407 External link xn SF
  xn PF
ENSXETP00000029118 External link xn SF
  xn PF
ENSXETP00000044889 External link xn SF
  xn PF
ENSXETP00000006533 External link xn SF
  xn PF
ENSXETP00000019633 External link xn SF
  xn PF
ENSXETP00000001647 External link xn SF
  xn PF
ENSXETP00000035623 External link xn SF
  xn PF
ENSXETP00000038344 External link xn SF
  xn PF
ENSXETP00000001419 External link xn SF
  xn PF
ENSXETP00000021944 External link xn SF
  xn PF
ENSXETP00000001472 External link xn SF
  xn PF
ENSXETP00000011150 External link xn SF
  xn PF
ENSXETP00000035260 External link xn SF
  xn PF
ENSXETP00000040139 External link xn SF
  xn PF
ENSXETP00000054187 External link xn SF
  xn PF
ENSXETP00000006823 External link xn SF
  xn PF
ENSXETP00000050646 External link xn SF
  xn PF
ENSXETP00000000645 External link xn SF
  xn PF