DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Pan troglodytes 49_21h (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSPTRP00000030262 External link xq SF
  xq PF No hits
ENSPTRP00000031247 External link xq SF
  xq PF
ENSPTRP00000035458 External link xq SF
  xq PF
ENSPTRP00000035460 External link xq SF
  xq PF
ENSPTRP00000035620 External link xq SF
  xq PF
ENSPTRP00000018952 External link xq SF
  xq PF
ENSPTRP00000001298 External link xq SF
  xq PF
ENSPTRP00000035459 External link xq SF
  xq PF
ENSPTRP00000028170 External link xq SF
  xq PF
ENSPTRP00000036745 External link xq SF
  xq PF
ENSPTRP00000029386 External link xq SF
  xq PF
ENSPTRP00000036266 External link xq SF
  xq PF
ENSPTRP00000028509 External link xq SF
  xq PF
ENSPTRP00000024049 External link xq SF
  xq PF
ENSPTRP00000022244 External link xq SF
  xq PF
ENSPTRP00000022255 External link xq SF
  xq PF
ENSPTRP00000022247 External link xq SF
  xq PF
ENSPTRP00000022251 External link xq SF
  xq PF
ENSPTRP00000054921 External link xq SF
  xq PF
ENSPTRP00000000762 External link xq SF
  xq PF
ENSPTRP00000023672 External link xq SF
  xq PF
ENSPTRP00000016759 External link xq SF
  xq PF
ENSPTRP00000041314 External link xq SF
  xq PF
ENSPTRP00000023196 External link xq SF
  xq PF
ENSPTRP00000023083 External link xq SF
  xq PF
ENSPTRP00000013169 External link xq SF
  xq PF
ENSPTRP00000024841 External link xq SF
  xq PF
ENSPTRP00000016255 External link xq SF
  xq PF
ENSPTRP00000006675 External link xq SF
  xq PF
ENSPTRP00000046615 External link xq SF
  xq PF
ENSPTRP00000041030 External link xq SF
  xq PF
ENSPTRP00000047476 External link xq SF
  xq PF
ENSPTRP00000017489 External link xq SF
  xq PF
ENSPTRP00000017000 External link xq SF
  xq PF
ENSPTRP00000012341 External link xq SF
  xq PF
ENSPTRP00000015429 External link xq SF
  xq PF
ENSPTRP00000036443 External link xq SF
  xq PF
ENSPTRP00000036892 External link xq SF
  xq PF
ENSPTRP00000009320 External link xq SF
  xq PF
ENSPTRP00000036533 External link xq SF
  xq PF
ENSPTRP00000036487 External link xq SF
  xq PF
ENSPTRP00000003025 External link xq SF
  xq PF
ENSPTRP00000002698 External link xq SF
  xq PF
ENSPTRP00000002905 External link xq SF
  xq PF
ENSPTRP00000044424 External link xq SF
  xq PF
ENSPTRP00000034232 External link xq SF
  xq PF
ENSPTRP00000043539 External link xq SF
  xq PF
ENSPTRP00000023606 External link xq SF
  xq PF
ENSPTRP00000054198 External link xq SF
  xq PF
ENSPTRP00000016858 External link xq SF
  xq PF