DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)
Taxonomy: Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
YDR409W External link xs SF
Gene name: SIZ1  xs PF
YOR156C External link xs SF
Gene name: NFI1  xs PF
YGL166W External link xs SF
Gene name: CUP2  xs PF
YPR008W External link xs SF
Gene name: HAA1  xs PF
YMR021C External link xs SF
Gene name: MAC1  xs PF
YKL185W External link xs SF
Gene name: ASH1  xs PF
YMR136W External link xs SF
Gene name: GAT2  xs PF
YJL110C External link xs SF
Gene name: GZF3  xs PF
YFL021W External link xs SF
Gene name: GAT1  xs PF
YCR018C External link xs SF
Gene name: SRD1  xs PF
YPL021W External link xs SF
Gene name: ECM23  xs PF
YLR013W External link xs SF
Gene name: GAT3  xs PF
YER040W External link xs SF
Gene name: GLN3  xs PF
YIR013C External link xs SF
Gene name: GAT4  xs PF
YKR034W External link xs SF
Gene name: DAL80  xs PF
YBR239C External link xs SF
Gene name: YBR239C  xs PF
YPL133C External link xs SF
Gene name: RDS2  xs PF
YOL089C External link xs SF
Gene name: HAL9  xs PF
YML076C External link xs SF
Gene name: WAR1  xs PF No hits
YKL222C External link xs SF
Gene name: YKL222C  xs PF
YNR063W External link xs SF
Gene name: YNR063W  xs PF
YBR150C External link xs SF
Gene name: TBS1  xs PF
YLR014C External link xs SF
Gene name: PPR1  xs PF
YLR098C External link xs SF
Gene name: CHA4  xs PF
YOR162C External link xs SF
Gene name: YRR1  xs PF
YHR178W External link xs SF
Gene name: STB5  xs PF
YBR240C External link xs SF
Gene name: THI2  xs PF
YPR196W External link xs SF
Gene name: YPR196W  xs PF
YJL206C External link xs SF
Gene name: YJL206C  xs PF
YLR228C External link xs SF
Gene name: ECM22  xs PF
YGR288W External link xs SF
Gene name: MAL13  xs PF
YMR019W External link xs SF
Gene name: STB4  xs PF
YKR064W External link xs SF
Gene name: YKR064W  xs PF
YLR451W External link xs SF
Gene name: LEU3  xs PF
YIL130W External link xs SF
Gene name: YIL130W  xs PF
YGL013C External link xs SF
Gene name: PDR1  xs PF
YDR520C External link xs SF
Gene name: YDR520C  xs PF
YBR297W External link xs SF
Gene name: MAL33  xs PF
YPL248C External link xs SF
Gene name: GAL4  xs PF
YMR168C External link xs SF
Gene name: CEP3  xs PF
YHR056C External link xs SF
Gene name: RSC30  xs PF
YCR106W External link xs SF
Gene name: RDS1  xs PF
YDR207C External link xs SF
Gene name: UME6  xs PF
YER184C External link xs SF
Gene name: YER184C  xs PF
YOR380W External link xs SF
Gene name: RDR1  xs PF
YJL089W External link xs SF
Gene name: SIP4  xs PF
YMR280C External link xs SF
Gene name: CAT8  xs PF
YOR363C External link xs SF
Gene name: PIP2  xs PF
YBR033W External link xs SF
Gene name: YBR033W  xs PF
YDR421W External link xs SF
Gene name: ARO80  xs PF