DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Saccharomyces paradoxus MIT
Taxonomy: Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
source (downloaded: 2004-07-16)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ORFP:5259 y8 SF
  y8 PF
ORFP:20904 y8 SF
  y8 PF
ORFP:17243 y8 SF
  y8 PF
ORFP:23384 y8 SF
  y8 PF
ORFP:14781 y8 SF
  y8 PF
ORFP:23503 y8 SF
  y8 PF
ORFP:16771 y8 SF
  y8 PF
ORFP:2489 y8 SF
  y8 PF
ORFP:6181 y8 SF
  y8 PF
ORFP:11722 y8 SF
  y8 PF
ORFP:11320 y8 SF
  y8 PF
ORFP:13369 y8 SF
  y8 PF
ORFP:23312 y8 SF
  y8 PF
ORFP:6983 y8 SF
  y8 PF
ORFP:14176 y8 SF
  y8 PF
ORFP:1958 y8 SF
  y8 PF
ORFP:422 y8 SF
  y8 PF
ORFP:3145 y8 SF
  y8 PF
ORFP:22406 y8 SF
  y8 PF
ORFP:1967 y8 SF
  y8 PF
ORFP:4509 y8 SF
  y8 PF
ORFP:17249 y8 SF
  y8 PF
ORFP:761 y8 SF
  y8 PF
ORFP:10716 y8 SF
  y8 PF
ORFP:976 y8 SF
  y8 PF
ORFP:8420 y8 SF
  y8 PF
ORFP:9515 y8 SF
  y8 PF
ORFP:20926 y8 SF
  y8 PF
ORFP:4855 y8 SF
  y8 PF
ORFP:13626 y8 SF
  y8 PF
ORFP:9486 y8 SF
  y8 PF
ORFP:2166 y8 SF
  y8 PF
ORFP:5357 y8 SF
  y8 PF
ORFP:593 y8 SF
  y8 PF
ORFP:3859 y8 SF
  y8 PF
ORFP:14459 y8 SF
  y8 PF
ORFP:14775 y8 SF
  y8 PF
ORFP:10181 y8 SF
  y8 PF
ORFP:19574 y8 SF
  y8 PF
ORFP:9504 y8 SF
  y8 PF
ORFP:4533 y8 SF
  y8 PF
ORFP:9523 y8 SF
  y8 PF
ORFP:19960 y8 SF
  y8 PF
ORFP:11363 y8 SF
  y8 PF
ORFP:11686 y8 SF
  y8 PF
ORFP:21920 y8 SF
  y8 PF
ORFP:15874 y8 SF
  y8 PF
ORFP:11616 y8 SF
  y8 PF
ORFP:12907 y8 SF
  y8 PF
ORFP:15147 y8 SF
  y8 PF