DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Cyanidioschyzon merolae
Taxonomy: Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
source (downloaded: 2005-10-05)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
gnl|CMER|CME102C External link ya SF
  ya PF
gnl|CMER|CMP135C External link ya SF
  ya PF
gnl|CMER|CMD180C External link ya SF
  ya PF
gnl|CMER|CMT559C External link ya SF
  ya PF
gnl|CMER|CMR493C External link ya SF
  ya PF
gnl|CMER|CMO257C External link ya SF
  ya PF
gnl|CMER|CMH237C External link ya SF
  ya PF
gnl|CMER|CMH192C External link ya SF
  ya PF
gnl|CMER|CMK079C External link ya SF
  ya PF
gnl|CMER|CMS149C External link ya SF
  ya PF
gnl|CMER|CMA095C External link ya SF
  ya PF
gnl|CMER|CMV080C External link ya SF
  ya PF
gnl|CMER|CMV094C External link ya SF
  ya PF
gnl|CMER|CMC135C External link ya SF
  ya PF No hits
gnl|CMER|CMK034C External link ya SF
  ya PF
gnl|CMER|CMJ111C External link ya SF
  ya PF
gnl|CMER|CMB029C External link ya SF
  ya PF
gnl|CMER|CMH122C External link ya SF
  ya PF
gnl|CMER|CMV044C External link ya SF
  ya PF
gnl|CMER|CMT433C External link ya SF
  ya PF
gnl|CMER|CMO187C External link ya SF
  ya PF
gnl|CMER|CMT601C External link ya SF
  ya PF
gnl|CMER|CMV095C External link ya SF
  ya PF No hits
gnl|CMER|CMR316C External link ya SF
  ya PF No hits
gnl|CMER|CMT597C External link ya SF
  ya PF
gnl|CMER|CMT067C External link ya SF
  ya PF
gnl|CMER|CML181C External link ya SF
  ya PF
gnl|CMER|CML315C External link ya SF
  ya PF
gnl|CMER|CMB005C External link ya SF
  ya PF
gnl|CMER|CML277C External link ya SF
  ya PF
gnl|CMER|CMJ215C External link ya SF
  ya PF
gnl|CMER|CMR098C External link ya SF
  ya PF
gnl|CMER|CMK280C External link ya SF
  ya PF
gnl|CMER|CMS147C External link ya SF
  ya PF
gnl|CMER|CMG097C External link ya SF
  ya PF No hits
gnl|CMER|CMR124C External link ya SF
  ya PF
gnl|CMER|CMB159C External link ya SF
  ya PF
gnl|CMER|CMR153C External link ya SF
  ya PF
gnl|CMER|CML101C External link ya SF
  ya PF
gnl|CMER|CMS495C External link ya SF
  ya PF
gnl|CMER|CMT550C External link ya SF
  ya PF
gnl|CMER|CMP232C External link ya SF
  ya PF
gnl|CMER|CMR152C External link ya SF
  ya PF
gnl|CMER|CMH049C External link ya SF
  ya PF No hits
gnl|CMER|CMA023C External link ya SF
  ya PF
gnl|CMER|CMB079C External link ya SF
  ya PF
gnl|CMER|CMO298C External link ya SF
  ya PF
gnl|CMER|CML246C External link ya SF
  ya PF
gnl|CMER|CMK043C External link ya SF
  ya PF
gnl|CMER|CMR176C External link ya SF
  ya PF