DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Glycine max Early assembly
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine
source (downloaded: 2008-04-07)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
Gm0013x00349 yg SF
  yg PF
Gm0148x00003 yg SF
  yg PF
Gm0053x00471 yg SF
  yg PF
Gm0153x00054 yg SF
  yg PF
Gm0181x00025 yg SF
  yg PF
Gm0148x00063 yg SF
  yg PF
Gm0111x00018 yg SF
  yg PF
Gm0112x00254 yg SF
  yg PF
Gm0215x00104 yg SF
  yg PF
Gm0088x00430 yg SF
  yg PF
Gm0171x00062 yg SF
  yg PF
Gm0084x00111 yg SF
  yg PF
Gm0025x00498 yg SF
  yg PF
Gm0082x00353.1 yg SF
  yg PF
Gm0118x00068 yg SF
  yg PF
Gm0082x00353.2 yg SF
  yg PF
Gm0220x00014 yg SF
  yg PF
Gm0009x00142 yg SF
  yg PF
Gm0211x00021 yg SF
  yg PF
Gm0004x00438 yg SF
  yg PF
Gm0141x00111 yg SF
  yg PF
Gm0086x00022 yg SF
  yg PF
Gm0015x00145 yg SF
  yg PF
Gm0025x00230 yg SF
  yg PF
Gm0104x00011 yg SF
  yg PF
Gm0074x00039 yg SF
  yg PF
Gm0097x00030 yg SF
  yg PF
Gm0148x00135 yg SF
  yg PF
Gm0035x00041 yg SF
  yg PF
Gm0111x00028 yg SF
  yg PF
Gm0068x00315 yg SF
  yg PF
Gm0025x00461 yg SF
  yg PF
Gm0082x00321 yg SF
  yg PF
Gm0063x00023 yg SF
  yg PF
Gm0038x00229 yg SF
  yg PF
Gm0169x00084.1 yg SF
  yg PF
Gm0026x00298 yg SF
  yg PF
Gm0053x00402 yg SF
  yg PF
Gm0143x00103 yg SF
  yg PF
Gm0131x00149 yg SF
  yg PF
Gm0069x00052 yg SF
  yg PF
Gm0072x00168 yg SF
  yg PF
Gm0040x00331 yg SF
  yg PF
Gm0010x00343 yg SF
  yg PF
Gm0109x00078 yg SF
  yg PF
Gm0169x00084.2 yg SF
  yg PF
Gm0111x10053 yg SF
  yg PF
Gm0019x00039 yg SF
  yg PF
Gm0143x00085 yg SF
  yg PF
Gm0242x00012 yg SF
  yg PF