DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Mycosphaerella fijiensis
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Capnodiales; Mycosphaerellaceae; Mycosphaerella
source (downloaded: 2007-10-02)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Mycfi1|55893|estExt_Genewise1Plus.C_13626 External link ym SF
  ym PF
jgi|Mycfi1|78094|fgenesh1_pg.C_scaffold_3000340 External link ym SF
  ym PF
jgi|Mycfi1|79418|fgenesh1_pg.C_scaffold_7000021 External link ym SF
  ym PF
jgi|Mycfi1|10849|gw1.1.1302.1 External link ym SF
  ym PF
jgi|Mycfi1|54037|estExt_Genewise1.C_320181 External link ym SF
  ym PF
jgi|Mycfi1|85908|estExt_fgenesh1_pg.C_10665 External link ym SF
  ym PF
jgi|Mycfi1|82568|fgenesh1_pg.C_scaffold_16000143 External link ym SF
  ym PF No hits
jgi|Mycfi1|26256|e_gw1.1.1718.1 External link ym SF
  ym PF
jgi|Mycfi1|79110|fgenesh1_pg.C_scaffold_6000132 External link ym SF
  ym PF
jgi|Mycfi1|85869|estExt_fgenesh1_pg.C_10584 External link ym SF
  ym PF
jgi|Mycfi1|27962|e_gw1.1.3784.1 External link ym SF
  ym PF
jgi|Mycfi1|10858|gw1.1.1306.1 External link ym SF
  ym PF
jgi|Mycfi1|33121|e_gw1.5.1026.1 External link ym SF
  ym PF
jgi|Mycfi1|43729|e_gw1.22.234.1 External link ym SF
  ym PF
jgi|Mycfi1|76004|fgenesh1_pg.C_scaffold_1000879 External link ym SF
  ym PF
jgi|Mycfi1|39881|e_gw1.14.504.1 External link ym SF
  ym PF
jgi|Mycfi1|64278|fgenesh1_pm.C_scaffold_10000002 External link ym SF
  ym PF
jgi|Mycfi1|61087|estExt_Genewise1Plus.C_410011 External link ym SF
  ym PF
jgi|Mycfi1|27880|e_gw1.1.2618.1 External link ym SF
  ym PF
jgi|Mycfi1|58936|estExt_Genewise1Plus.C_120407 External link ym SF
  ym PF
jgi|Mycfi1|55983|estExt_Genewise1Plus.C_13865 External link ym SF
  ym PF
jgi|Mycfi1|42930|e_gw1.20.218.1 External link ym SF
  ym PF
jgi|Mycfi1|77291|fgenesh1_pg.C_scaffold_2000178 External link ym SF
  ym PF No hits
jgi|Mycfi1|52991|estExt_Genewise1.C_160684 External link ym SF
  ym PF
jgi|Mycfi1|77382|fgenesh1_pg.C_scaffold_2000269 External link ym SF
  ym PF
jgi|Mycfi1|30129|e_gw1.2.507.1 External link ym SF
  ym PF
jgi|Mycfi1|57167|estExt_Genewise1Plus.C_50677 External link ym SF
  ym PF
jgi|Mycfi1|79880|fgenesh1_pg.C_scaffold_7000483 External link ym SF
  ym PF
jgi|Mycfi1|85289|fgenesh1_pg.C_scaffold_44000064 External link ym SF
  ym PF
jgi|Mycfi1|87957|estExt_fgenesh1_pg.C_110273 External link ym SF
  ym PF No hits
jgi|Mycfi1|90011|synt_with_mycgr.6__4 External link ym SF
  ym PF
jgi|Mycfi1|10996|gw1.1.1345.1 External link ym SF
  ym PF
jgi|Mycfi1|83546|fgenesh1_pg.C_scaffold_21000033 External link ym SF
  ym PF
jgi|Mycfi1|75223|fgenesh1_pg.C_scaffold_1000098 External link ym SF
  ym PF
jgi|Mycfi1|79818|fgenesh1_pg.C_scaffold_7000421 External link ym SF
  ym PF
jgi|Mycfi1|36148|e_gw1.9.518.1 External link ym SF
  ym PF
jgi|Mycfi1|80632|fgenesh1_pg.C_scaffold_9000416 External link ym SF
  ym PF
jgi|Mycfi1|55173|estExt_Genewise1Plus.C_11744 External link ym SF
  ym PF
jgi|Mycfi1|27568|e_gw1.1.1551.1 External link ym SF
  ym PF
jgi|Mycfi1|76846|fgenesh1_pg.C_scaffold_1001721 External link ym SF
  ym PF
jgi|Mycfi1|2620|gw1.43.27.1 External link ym SF
  ym PF
jgi|Mycfi1|84176|fgenesh1_pg.C_scaffold_27000006 External link ym SF
  ym PF
jgi|Mycfi1|89500|synt_with_mycgr.1__94 External link ym SF
  ym PF
jgi|Mycfi1|78198|fgenesh1_pg.C_scaffold_3000444 External link ym SF
  ym PF
jgi|Mycfi1|79333|fgenesh1_pg.C_scaffold_6000355 External link ym SF
  ym PF
jgi|Mycfi1|34745|e_gw1.7.93.1 External link ym SF
  ym PF
jgi|Mycfi1|41540|e_gw1.17.45.1 External link ym SF
  ym PF
jgi|Mycfi1|62803|fgenesh1_pm.C_scaffold_1000460 External link ym SF
  ym PF
jgi|Mycfi1|11318|gw1.10.415.1 External link ym SF
  ym PF
jgi|Mycfi1|88647|estExt_fgenesh1_pg.C_170267 External link ym SF
  ym PF