DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Mycosphaerella graminicola
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Capnodiales; Mycosphaerellaceae; Mycosphaerella
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Mycgr1|42196|fgenesh2_pg.C_scaffold_9000484 External link yo SF
  yo PF No hits
jgi|Mycgr1|84648|estExt_fgenesh2_pg.C_50338 External link yo SF
  yo PF
jgi|Mycgr1|10723|gw.10.519.1 External link yo SF
  yo PF
jgi|Mycgr1|61928|e_gw.8.581.1 External link yo SF
  yo PF
jgi|Mycgr1|44677|fgenesh2_pg.C_scaffold_17000107 External link yo SF
  yo PF
jgi|Mycgr1|60366|e_gw.7.695.1 External link yo SF
  yo PF
jgi|Mycgr1|81623|estExt_fgenesh2_pg.C_10349 External link yo SF
  yo PF
jgi|Mycgr1|69994|estExt_gwp_gw1.C_10761 External link yo SF
  yo PF
jgi|Mycgr1|87029|estExt_fgenesh2_pg.C_120339 External link yo SF
  yo PF No hits
jgi|Mycgr1|7082|gw.12.355.1 External link yo SF
  yo PF
jgi|Mycgr1|44418|fgenesh2_pg.C_scaffold_15000043 External link yo SF
  yo PF
jgi|Mycgr1|62319|e_gw.8.669.1 External link yo SF
  yo PF
jgi|Mycgr1|11001|gw.2.1259.1 External link yo SF
  yo PF
jgi|Mycgr1|48983|e_gw.1.167.1 External link yo SF
  yo PF
jgi|Mycgr1|84876|estExt_fgenesh2_pg.C_50702 External link yo SF
  yo PF
jgi|Mycgr1|82280|estExt_fgenesh2_pg.C_11326 External link yo SF
  yo PF
jgi|Mycgr1|1517|gw.8.111.1 External link yo SF
  yo PF
jgi|Mycgr1|1168|gw.1.218.1 External link yo SF
  yo PF
jgi|Mycgr1|58730|e_gw.5.105.1 External link yo SF
  yo PF
jgi|Mycgr1|35836|fgenesh2_pg.C_scaffold_2000065 External link yo SF
  yo PF
jgi|Mycgr1|83315|estExt_fgenesh2_pg.C_21032 External link yo SF
  yo PF
jgi|Mycgr1|81609|estExt_fgenesh2_pg.C_10317 External link yo SF
  yo PF
jgi|Mycgr1|61700|e_gw.8.33.1 External link yo SF
  yo PF
jgi|Mycgr1|62316|e_gw.8.685.1 External link yo SF
  yo PF
jgi|Mycgr1|42155|fgenesh2_pg.C_scaffold_9000443 External link yo SF
  yo PF
jgi|Mycgr1|11943|gw.6.830.1 External link yo SF
  yo PF
jgi|Mycgr1|84835|estExt_fgenesh2_pg.C_50627 External link yo SF
  yo PF
jgi|Mycgr1|85207|estExt_fgenesh2_pg.C_60463 External link yo SF
  yo PF
jgi|Mycgr1|40716|fgenesh2_pg.C_scaffold_7000233 External link yo SF
  yo PF
jgi|Mycgr1|57995|e_gw.5.845.1 External link yo SF
  yo PF
jgi|Mycgr1|44086|fgenesh2_pg.C_scaffold_13000324 External link yo SF
  yo PF
jgi|Mycgr1|42619|fgenesh2_pg.C_scaffold_10000400 External link yo SF
  yo PF
jgi|Mycgr1|51709|e_gw.1.2187.1 External link yo SF
  yo PF
jgi|Mycgr1|60929|e_gw.7.741.1 External link yo SF
  yo PF
jgi|Mycgr1|39525|fgenesh2_pg.C_scaffold_5000610 External link yo SF
  yo PF
jgi|Mycgr1|1905|gw.2.254.1 External link yo SF
  yo PF
jgi|Mycgr1|73872|estExt_gwp_gw1.C_30699 External link yo SF
  yo PF
jgi|Mycgr1|1195|gw.1.224.1 External link yo SF
  yo PF
jgi|Mycgr1|11687|gw.3.1135.1 External link yo SF
  yo PF
jgi|Mycgr1|1368|gw.2.180.1 External link yo SF
  yo PF
jgi|Mycgr1|74204|estExt_gwp_gw1.C_31188 External link yo SF
  yo PF No hits
jgi|Mycgr1|86064|estExt_fgenesh2_pg.C_90137 External link yo SF
  yo PF
jgi|Mycgr1|82724|estExt_fgenesh2_pg.C_20080 External link yo SF
  yo PF
jgi|Mycgr1|50639|e_gw.1.296.1 External link yo SF
  yo PF
jgi|Mycgr1|94820|estExt_Genewise.C_60575 External link yo SF
  yo PF
jgi|Mycgr1|49038|e_gw.1.2331.1 External link yo SF
  yo PF
jgi|Mycgr1|82024|estExt_fgenesh2_pg.C_10951 External link yo SF
  yo PF
jgi|Mycgr1|34187|fgenesh2_pg.C_scaffold_1000460 External link yo SF
  yo PF No hits
jgi|Mycgr1|49625|e_gw.1.1201.1 External link yo SF
  yo PF
jgi|Mycgr1|57470|e_gw.5.872.1 External link yo SF
  yo PF