DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Sporobolomyces roseus
Taxonomy: Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Microbotryomycetes; Sporidiobolales; mitosporic Sporidiobolales; Sporobolomyces
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Sporo1|31416|estExt_fgenesh1_pg.C_10611 External link yu SF
  yu PF
jgi|Sporo1|33761|estExt_fgenesh1_pg.C_100133 External link yu SF
  yu PF
jgi|Sporo1|14084|e_gw1.7.560.1 External link yu SF
  yu PF
jgi|Sporo1|14956|e_gw1.9.312.1 External link yu SF
  yu PF
jgi|Sporo1|24448|fgenesh1_pg.C_scaffold_1000334 External link yu SF
  yu PF
jgi|Sporo1|33644|estExt_fgenesh1_pg.C_90122 External link yu SF
  yu PF
jgi|Sporo1|4311|gw1.1.790.1 External link yu SF
  yu PF
jgi|Sporo1|31448|estExt_fgenesh1_pg.C_10674 External link yu SF
  yu PF
jgi|Sporo1|31502|estExt_fgenesh1_pg.C_10765 External link yu SF
  yu PF
jgi|Sporo1|33759|estExt_fgenesh1_pg.C_100129 External link yu SF
  yu PF No hits
jgi|Sporo1|28461|fgenesh1_pg.C_scaffold_7000366 External link yu SF
  yu PF
jgi|Sporo1|28202|fgenesh1_pg.C_scaffold_7000107 External link yu SF
  yu PF No hits
jgi|Sporo1|24829|fgenesh1_pg.C_scaffold_1000715 External link yu SF
  yu PF
jgi|Sporo1|26887|fgenesh1_pg.C_scaffold_4000366 External link yu SF
  yu PF
jgi|Sporo1|32867|estExt_fgenesh1_pg.C_50251 External link yu SF
  yu PF
jgi|Sporo1|33972|estExt_fgenesh1_pg.C_120146 External link yu SF
  yu PF
jgi|Sporo1|33406|estExt_fgenesh1_pg.C_70314 External link yu SF
  yu PF
jgi|Sporo1|31379|estExt_fgenesh1_pg.C_10554 External link yu SF
  yu PF
jgi|Sporo1|27926|fgenesh1_pg.C_scaffold_6000245 External link yu SF
  yu PF
jgi|Sporo1|27995|fgenesh1_pg.C_scaffold_6000314 External link yu SF
  yu PF
jgi|Sporo1|31686|estExt_fgenesh1_pg.C_20104 External link yu SF
  yu PF
jgi|Sporo1|28654|fgenesh1_pg.C_scaffold_8000158 External link yu SF
  yu PF
jgi|Sporo1|27959|fgenesh1_pg.C_scaffold_6000278 External link yu SF
  yu PF No hits
jgi|Sporo1|26598|fgenesh1_pg.C_scaffold_4000077 External link yu SF
  yu PF
jgi|Sporo1|32625|estExt_fgenesh1_pg.C_40373 External link yu SF
  yu PF
jgi|Sporo1|25359|fgenesh1_pg.C_scaffold_2000209 External link yu SF
  yu PF
jgi|Sporo1|7684|gw1.6.615.1 External link yu SF
  yu PF
jgi|Sporo1|5931|gw1.6.498.1 External link yu SF
  yu PF
jgi|Sporo1|7628|gw1.6.607.1 External link yu SF
  yu PF
jgi|Sporo1|14178|e_gw1.7.449.1 External link yu SF
  yu PF
jgi|Sporo1|32403|estExt_fgenesh1_pg.C_30555 External link yu SF
  yu PF
jgi|Sporo1|27384|fgenesh1_pg.C_scaffold_5000273 External link yu SF
  yu PF
jgi|Sporo1|7912|gw1.5.796.1 External link yu SF
  yu PF
jgi|Sporo1|32127|estExt_fgenesh1_pg.C_30076 External link yu SF
  yu PF
jgi|Sporo1|31584|estExt_fgenesh1_pg.C_10924 External link yu SF
  yu PF No hits
jgi|Sporo1|32377|estExt_fgenesh1_pg.C_30513 External link yu SF
  yu PF
jgi|Sporo1|27267|fgenesh1_pg.C_scaffold_5000156 External link yu SF
  yu PF
jgi|Sporo1|27375|fgenesh1_pg.C_scaffold_5000264 External link yu SF
  yu PF No hits
jgi|Sporo1|31201|estExt_fgenesh1_pg.C_10219 External link yu SF
  yu PF
jgi|Sporo1|32113|estExt_fgenesh1_pg.C_30055 External link yu SF
  yu PF
jgi|Sporo1|15035|e_gw1.10.50.1 External link yu SF
  yu PF
jgi|Sporo1|24738|fgenesh1_pg.C_scaffold_1000624 External link yu SF
  yu PF
jgi|Sporo1|15164|e_gw1.10.299.1 External link yu SF
  yu PF
jgi|Sporo1|14887|e_gw1.9.299.1 External link yu SF
  yu PF
jgi|Sporo1|8013|gw1.5.808.1 External link yu SF
  yu PF
jgi|Sporo1|31441|estExt_fgenesh1_pg.C_10660 External link yu SF
  yu PF No hits
jgi|Sporo1|14273|e_gw1.7.116.1 External link yu SF
  yu PF
jgi|Sporo1|24436|fgenesh1_pg.C_scaffold_1000322 External link yu SF
  yu PF No hits
jgi|Sporo1|15223|e_gw1.10.295.1 External link yu SF
  yu PF
jgi|Sporo1|31262|estExt_fgenesh1_pg.C_10324 External link yu SF
  yu PF