DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Zea mays subsp. mays Early assembly
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; Panicoideae; Andropogoneae; Zea
source (downloaded: 2008-04-07)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
AC196777.3_FGT026 External link ze SF
  ze PF
AC195787.2_FGT016 External link ze SF
  ze PF
AC190617.4_FGT003 External link ze SF
  ze PF
AC190911.3_FGT027 External link ze SF
  ze PF
AC194246.2_FGT009 External link ze SF
  ze PF
AC206395.1_FGT022 External link ze SF
  ze PF
AC187777.3_FGT005 External link ze SF
  ze PF
AC207770.1_FGT022 External link ze SF
  ze PF
AC207121.1_FGT007 External link ze SF
  ze PF
AC211566.1_FGT006 External link ze SF
  ze PF
AC212579.1_FGT006 External link ze SF
  ze PF
AC198131.3_FGT038 External link ze SF
  ze PF
AC208362.1_FGT010 External link ze SF
  ze PF
AC208362.1_FGT022 External link ze SF
  ze PF
AC209365.1_FGT025 External link ze SF
  ze PF
AC195332.3_FGT028 External link ze SF
  ze PF
AC200562.3_FGT029 External link ze SF
  ze PF
AC191370.2_FGT009 External link ze SF
  ze PF
AC199062.2_FGT010 External link ze SF
  ze PF
AC190559.3_FGT008 External link ze SF
  ze PF
AC196135.2_FGT032 External link ze SF
  ze PF
AC177872.1_FGT018 External link ze SF
  ze PF
AC184831.3_FGT021 External link ze SF
  ze PF
AC195148.2_FGT001 External link ze SF
  ze PF
AC194139.2_FGT010 External link ze SF
  ze PF
AC212230.1_FGT014 External link ze SF
  ze PF
AC196028.1_FGT021 External link ze SF
  ze PF
AC187876.3_FGT015 External link ze SF
  ze PF
AC208835.1_FGT003 External link ze SF
  ze PF
AC193489.3_FGT004 External link ze SF
  ze PF
AC190559.3_FGT028 External link ze SF
  ze PF
AC200657.2_FGT020 External link ze SF
  ze PF
AC184125.3_FGT010 External link ze SF
  ze PF
AC196048.2_FGT017 External link ze SF
  ze PF
AC212284.1_FGT018 External link ze SF
  ze PF
AC199816.3_FGT013 External link ze SF
  ze PF
AC196462.3_FGT020 External link ze SF
  ze PF
AC185257.3_FGT022 External link ze SF
  ze PF
AC202070.2_FGT012 External link ze SF
  ze PF
AC210904.1_FGT016 External link ze SF
  ze PF
AC199892.3_FGT020 External link ze SF
  ze PF
AC208127.1_FGT023 External link ze SF
  ze PF
AC194965.2_FGT002 External link ze SF
  ze PF
AC200748.3_FGT004 External link ze SF
  ze PF
AC195219.2_FGT029 External link ze SF
  ze PF
AC186156.3_FGT016 External link ze SF
  ze PF
AC209642.1_FGT039 External link ze SF
  ze PF
AC201754.3_FGT002 External link ze SF
  ze PF
AC207897.1_FGT009 External link ze SF
  ze PF
AC194094.3_FGT025 External link ze SF
  ze PF