DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Sequence ID Search
Search for sequences which contain a DNA binding domain.

Enter a sequence id, or part of a an id, for example:

Model Organism Gene Name Search
Search for transcription factors with a specific gene name from the following model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus and Saccharomyces cerevisiae.

Enter a model organism gene name, for example:
YPL216W (Saccharomyces cerevisiae)
ZNF30 (Homo sapiens)
CG30426 (Drosophila melanogaster)
Zfp397 (Mus musculus)

Search for domain families in transcription factors
Search for transcription factors containing either DNA binding domains (Default) or non-DNA binding domains.

Enter a SUPERFAMILY or PFAM domain family identifier or name, for example:
46785 (SUPERFAMILY sunid)
0045656 (SUPERFAMILY model)
PF05848 (PFAM family accession)
CtsR (PFAM family id)
Then choose to search for either DNA binding domains (DBD) or non-DNA binding domains (non-DBD) by clicking the relevant button.

DBD (Default)  Non-DBD
Protein Sequence Search
Enter an amino acid sequence (special characters are not supported) to search against the DNA binding domain HMMs.
Please enter one sequence at a time. The sequence search will take several minutes.