DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: "Winged helix" DNA-binding domain.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
scaffold_72.23 External link nk SF
  nk PF
gi|91787211|ref|YP_548163.1| External link p6 SF
  p6 PF
gi|15920509|ref|NP_376178.1| External link sv SF
  sv PF
gi|71911262|ref|YP_282812.1| External link zp SF
  zp PF
gi|139473887|ref|YP_001128603.1| External link 4z SF
  4z PF
gi|28895335|ref|NP_801685.1| External link s8 SF
  s8 PF
gi|21910978|ref|NP_665246.1| External link s7 SF
  s7 PF
gi|169826081|ref|YP_001696239.1| External link 7z SF
  7z PF
gi|94989081|ref|YP_597182.1| External link pk SF
  pk PF
gi|94992972|ref|YP_601071.1| External link pp SF
  pp PF
gi|50913381|ref|YP_059353.1| External link sp SF
  sp PF
ENSLAFP00000003686 External link lk SF
  lk PF No hits
ENSLAFP00000003686 External link l1 SF
  l1 PF No hits
ENSMODP00000023103 External link oo SF
  oo PF No hits
ENSMODP00000023103 External link op SF
  op PF No hits
FBpp0219125 External link dw SF
  dw PF
jgi|Brafl1|83002|fgenesh2_pg.scaffold_117000002 External link bf SF
  bf PF
jgi|Capca1|191221|fgenesh1_pg.C_scaffold_68000018 External link i1 SF
  i1 PF
ENSCPOP00000004828 External link g2 SF
  g2 PF No hits
FBpp0269109 External link dy SF
  dy PF
jgi|Brafl1|105681|fgenesh2_pg.scaffold_503000011 External link bf SF
  bf PF No hits
ENSMMUP00000033587 External link r2 SF
  r2 PF
ENSPPYP00000005598 External link of SF
  of PF
ENSTRUP00000031370 External link to SF
  to PF
CG6312-PA External link dn SF
Gene name: Rfx  dn PF
ENSPTRP00000043155 External link xp SF
  xp PF
ENSSTOP00000008040 External link g3 SF
  g3 PF No hits
ENSMMUP00000022612 External link ru SF
  ru PF
ENSXETP00000012261 External link xn SF
  xn PF
ENSP00000266774 External link hs SF
  hs PF
ENSMLUP00000006324 External link l2 SF
  l2 PF No hits
CIMG_05985 im SF
  im PF
ENSCPOP00000009059 External link g2 SF
  g2 PF
GSTENP00033639001 External link tn SF
  tn PF
ENSP00000290524 External link ht SF
Gene name: RFX5  ht PF
PGTG_11391 p4 SF
  p4 PF
ENSDARP00000020225 External link da SF
  da PF
FBpp0192030 External link dz SF
  dz PF
jgi|Trive1|34449|e_gw1.4.692.1 External link nj SF
  nj PF
bma1.CDS.253008.0 r0 SF
  r0 PF
ENSOCUP00000004334 External link o3 SF
  o3 PF
ENSMLUP00000015903 External link l2 SF
  l2 PF
ATEG_09416 gi SF
  gi PF
ENSMUSP00000051107 External link mm SF
Gene name: Rfx4  mm PF
ENSPPYP00000010795 External link o5 SF
  o5 PF
ENSMMUP00000001094 External link ru SF
  ru PF
ENSDARP00000012441 External link da SF
  da PF
ENSECAP00000009186 External link e5 SF
  e5 PF
ENSORLP00000006734 External link ol SF
  ol PF
ENSMLUP00000013865 External link lu SF
  lu PF