DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: Nucleic acid-binding proteins.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|162453873|ref|YP_001616240.1| External link 60 SF
  60 PF
gi|182678206|ref|YP_001832352.1| External link 8q SF
  8q PF
gi|89902608|ref|YP_525079.1| External link rx SF
  rx PF No hits
gi|86157882|ref|YP_464667.1| External link ae SF
  ae PF
gi|121603732|ref|YP_981061.1| External link 01 SF
  01 PF
ENSMODP00000029643 External link op SF
  op PF
ENSRNOP00000037788 External link ro SF
  ro PF
ENSMUSP00000078361 External link mm SF
  mm PF
ENSMODP00000022487 External link op SF
  op PF
ENSMUSP00000078361 External link mh SF
  mh PF
ENSMUSP00000101128 External link mm SF
  mm PF
ENSRNOP00000037788 External link rn SF
  rn PF
ENSMODP00000029643 External link oo SF
  oo PF
gi|50120514|ref|YP_049681.1| External link er SF
  er PF
gi|53802978|ref|YP_115222.1| External link mt SF
  mt PF
gi|146310755|ref|YP_001175829.1| External link 08 SF
  08 PF
gi|170020091|ref|YP_001725045.1| External link 9d SF
  9d PF
gi|93005230|ref|YP_579667.1| External link pz SF
  pz PF
gi|26249027|ref|NP_755067.1| External link e0 SF
  e0 PF
gi|157145107|ref|YP_001452426.1| External link 5x SF
  5x PF
jgi|Emihu1|113467|fgeneshEH_pg.190__11 External link ex SF
  ex PF
gi|121604253|ref|YP_981582.1| External link 01 SF
  01 PF
jgi|Emihu1|228175|gm1.14400110 External link ex SF
  ex PF
gi|184159755|ref|YP_001848094.1| External link 99 SF
  99 PF
gi|170081226|ref|YP_001730546.1| External link 8n SF
  8n PF
gi|50086376|ref|YP_047886.1| External link ab SF
  ab PF
gi|89108400|ref|AP_002180.1| External link ew SF
  ew PF
gi|169794439|ref|YP_001712232.1| External link 7t SF
  7t PF
gi|146329050|ref|YP_001209092.1| External link 3i SF
  3i PF
gi|16129517|ref|NP_416076.1| External link ec SF
Gene name: cspF  ec PF
gi|116621692|ref|YP_823848.1| External link 25 SF
  25 PF
gi|170727762|ref|YP_001761788.1| External link 88 SF
  88 PF
gi|163845761|ref|YP_001633805.1| External link 6w SF
  6w PF No hits
Tc00.1047053509007.40 External link uz SF
  uz PF
gi|160900686|ref|YP_001566268.1| External link 7d SF
  7d PF
LinJ31_V3.1350 External link lh SF
  lh PF No hits
LmjF31.1330 External link em SF
  em PF No hits
Tc00.1047053508965.70 External link uz SF
  uz PF
28357.m000094 External link rk SF
  rk PF
Tb927.8.7820/Tb08.6H23.80 External link tb SF
  tb PF
gi|83591523|ref|YP_425275.1| External link rb SF
  rb PF No hits
gi|188533190|ref|YP_001906987.1| External link ej SF
  ej PF
gi|148657770|ref|YP_001277975.1| External link 4a SF
  4a PF